prot_H-elongata_contig12233.1707.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12233.1707.1
Unique Nameprot_H-elongata_contig12233.1707.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length488
Homology
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BLAST of mRNA_H-elongata_contig12233.1707.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.330e-49
Identity = 190/392 (48.47%), Postives = 213/392 (54.34%), Query Frame = 0 
Query:   18 VSASSETALKAFQGRQTAVRLAKLEGAEAGEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------GGAGEVGVRVGAVSLGGMVGTAGNEAGSDGAPPEVVNAALEKKLNPPLWPQSFEEDGAAYLFDGPSGYFYESSTXXXYDPKSKLYCKDMRWHQHVPGQDPAFVPVEQEGTAYQDEAQDQNAVRTVDPIPVGGASTDAQAQVQATARLNGSGAKPAAAAKPVGNSVGGNRSKGIGGKKQRIAFGFKGIKLAKPGAGS-------VVGAAVG--SEDXXXXXXXXXXXXXXXXXXSGPGG-LAKKRRLEDLSKWKARKLEAAEK----AVDDKGKAPEPLHIAPRLQRKEP------TYDPPAPLLPPL 369
            VSASS TALKAFQGRQ A RLAKLEG EA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    GG         A++    V T G  AGS+GA PE V AAL+KKLNPP WP  FEE GAAYLFDGPSGYFYES+T   YDP+SKLYCK M W+ H PGQDPAF PV Q+G     +A+   A    + + VG A+                                    K       R+AFGFKG KLAK  AG        V+G A    S D                   G GG LAKKR+LED+SKW ARKLEA +     A +    A +PLHIAPR Q++        +YDPPAPLLPPL
Sbjct:  226 VSASSVTALKAFQGRQNAARLAKLEGGEAATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDAXXXXXXXAMA----VVTLGGAAGSEGASPEAVCAALQKKLNPPDWPPPFEEAGAAYLFDGPSGYFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAFNPVSQQGGT---DARSSLANGASEGVSVGDATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKK---SSSRLAFGFKGAKLAKAAAGGGGVGASGVLGGADSDSSGDDSGGEVAAGVGRGTVGGGVGVGGALAKKRQLEDVSKWNARKLEAQQGEGGGASNGTKAAAQPLHIAPRRQQQPSAPQATISYDPPAPLLPPL 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12233.1707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L5_ECTSI2.330e-4948.47RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041591OCRE domainPFAMPF17780OCREcoord: 140..169
e-value: 2.1E-7
score: 30.9
NoneNo IPR availablePANTHERPTHR13948RNA-BINDING PROTEINcoord: 60..483
NoneNo IPR availablePANTHERPTHR13948:SF3RNA BINDING MOTIF PROTEIN HOMOLOGcoord: 60..483
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 449..479
score: 8.767

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12233contigH-elongata_contig12233:3934..6725 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12233.1707.1mRNA_H-elongata_contig12233.1707.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12233 2205..7444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12233.1707.1 ID=prot_H-elongata_contig12233.1707.1|Name=mRNA_H-elongata_contig12233.1707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=488bp
MSVGAGGRGKSSARAPAVSASSETALKAFQGRQTAVRLAKLEGAEAGEAD
ASAAAAAAAVAARTRVDTGSGAGTGSLAIAFAGGAGEVGVRVGAVSLGGM
VGTAGNEAGSDGAPPEVVNAALEKKLNPPLWPQSFEEDGAAYLFDGPSGY
FYESSTGVYYDPKSKLYCKDMRWHQHVPGQDPAFVPVEQEGTAYQDEAQD
QNAVRTVDPIPVGGASTDAQAQVQATARLNGSGAKPAAAAKPVGNSVGGN
RSKGIGGKKQRIAFGFKGIKLAKPGAGSVVGAAVGSEDDGGGGTNGSEST
GGGGSGSGPGGLAKKRRLEDLSKWKARKLEAAEKAVDDKGKAPEPLHIAP
RLQRKEPTYDPPAPLLPPLPGEDEAPNPEEVELPKAESSSVGDWVGGVGI
GGLMTGPRGGRGALGLGTGTGGRGQGGGNTVARAPGDGGDGSGAAPVVVA
CLLCRRSFGSTEMLRKHEKKSKLHKDNLAAAAKTAST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041591OCRE
IPR013087Znf_C2H2_type