mRNA_H-elongata_contig122321.1705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122321.1705.1
Unique NamemRNA_H-elongata_contig122321.1705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122321.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122321contigH-elongata_contig122321:39..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_000190.1
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.8620853-CDS-H-elongata_contig122321:38..2931622929719.8620853-CDS-H-elongata_contig122321:38..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122321 39..293 -
1691679131.725419-CDS-H-elongata_contig122321:38..2931691679131.725419-CDS-H-elongata_contig122321:38..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122321 39..293 -
1622929719.8730385-CDS-H-elongata_contig122321:880..9311622929719.8730385-CDS-H-elongata_contig122321:880..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122321 881..931 -
1691679131.7338634-CDS-H-elongata_contig122321:880..9311691679131.7338634-CDS-H-elongata_contig122321:880..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122321 881..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122321.1705.1prot_H-elongata_contig122321.1705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122321 39..931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122321.1705.1

>prot_H-elongata_contig122321.1705.1 ID=prot_H-elongata_contig122321.1705.1|Name=mRNA_H-elongata_contig122321.1705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
ENYLRLKDAELKELRSSVAKGKGADGAVTKAATVESGKVAVTFDAGGGGG
KAKCSGGGESKAVRASALVARCQRLEQENEELASSADVAKGDNLPSKLRK
G*
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mRNA from alignment at H-elongata_contig122321:39..931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122321.1705.1 ID=mRNA_H-elongata_contig122321.1705.1|Name=mRNA_H-elongata_contig122321.1705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=893bp|location=Sequence derived from alignment at H-elongata_contig122321:39..931- (Himanthalia elongata Himel1 dioecious)
GAAAATTATTTGAGGCTGAAGGACGCCGAGCTAAAGGAGCTCCGTTCGTC
GGTCGACAGGGACACTGACGCTAAAGCGAACATGACCAACATCACCAACA
TCAAGGTGAAGGAAAGGAAGATGAAAGGTTCGCAGCACTCATGGGCAGTG
TAGTTTATACCAGGCTTGGCTTGGCTTGGCTTGAAGGGATAAAATTGATG
AACATCCCCTTCTACAGTATACATCACCTTCTACAGTATACATTAGATAT
TGCATTAGATAATACAGTATACATCACCTTCTACAGTATACATTAGACAA
TACAGTATACATTGTATTAGACAATACAGTATTCAGTATACACTATTCAG
TGTTCTCCCGGAGAGTAAGGGTGATCGTGAGATTGAGAGTACGGCTGATA
CTGACAAGTAGACTGAAACTGAGACTAGACGTGGACTGCAATTGATAAGG
TACAAATAAACGTAGAAATAAAGGTACAAATAAAAGTACTCGCTGCTACA
AGTATTCTCGCAGGACGTTCGCCTGTCGCCAAAATGGATGTCTTTCCTTG
TTTCTGTTTTGATATTGATATTGATATTGATATTGTTCTGAATATCTGAA
TATTGGTTGAAATGTTGGTTGGGGGGGGATGGGGCAAGGTCGCCAAAGGG
AAAGGGGCGGATGGGGCGGTCACCAAAGCTGCCACAGTCGAAAGTGGCAA
GGTGGCGGTTACGTTTGACGCAGGTGGCGGTGGCGGGAAAGCGAAATGCA
GCGGTGGGGGAGAGAGCAAGGCTGTCCGGGCCTCTGCGCTGGTAGCTCGA
TGTCAGCGGCTGGAGCAAGAGAATGAAGAGCTGGCCTCGTCTGCAGACGT
TGCCAAAGGTGACAATTTACCCTCGAAGTTGCGAAAGGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig122321:39..931-

>mRNA_H-elongata_contig122321.1705.1 ID=mRNA_H-elongata_contig122321.1705.1|Name=mRNA_H-elongata_contig122321.1705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig122321:39..931- (Himanthalia elongata Himel1 dioecious)
GAAAATTATTTGAGGCTGAAGGACGCCGAGCTAAAGGAGCTCCGTTCGTC
GGAAAATTATTTGAGGCTGAAGGACGCCGAGCTAAAGGAGCTCCGTTCGT
CGGTCGCCAAAGGGAAAGGGGCGGATGGGGCGGTCACCAAAGCTGCCACA
GTCGAAAGTGGCAAGGTGGCGGTTACGTTTGACGCAGGTGGCGGTGGCGG
GAAAGCGAAATGCAGCGGTGGGGGAGAGAGCAAGGCTGTCCGGGCCTCTG
CGCTGGTAGCTCGATGTCAGCGGCTGGAGCAAGAGAATGAAGAGCTGGCC
TCGTCTGCAGACGTTGCCAAAGGTGACAATTTACCCTCGAAGTTGCGAAA
GGGTTAGGTCGCCAAAGGGAAAGGGGCGGATGGGGCGGTCACCAAAGCTG
CCACAGTCGAAAGTGGCAAGGTGGCGGTTACGTTTGACGCAGGTGGCGGT
GGCGGGAAAGCGAAATGCAGCGGTGGGGGAGAGAGCAAGGCTGTCCGGGC
CTCTGCGCTGGTAGCTCGATGTCAGCGGCTGGAGCAAGAGAATGAAGAGC
TGGCCTCGTCTGCAGACGTTGCCAAAGGTGACAATTTACCCTCGAAGTTG
CGAAAGGGTTAG
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