mRNA_H-elongata_contig12231.1704.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA) HSP 1 Score: 54.3 bits (129), Expect = 1.640e-6 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 13 ACGDRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
A G +W +D+GAT H++ TR Y+ + +++ A L+ +G G IE + ++++EDV YVPGISRNL S
Sbjct: 261 ADGKPNIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFS 345
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA) HSP 1 Score: 53.5 bits (127), Expect = 2.910e-6 Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 34 EWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
+W +D+GAT H++ TR Y+ + +++ A L+ +G G IE + ++++EDV YVPGISRNL S
Sbjct: 295 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFS 372
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A699L2D6_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L2D6_TANCI) HSP 1 Score: 51.6 bits (122), Expect = 1.380e-5 Identity = 25/78 (32.05%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 34 EWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
E +DSG +++M+H R + +K G+ V + D T ++ G G++++ + H +EDV YVPG+ R+L+S
Sbjct: 175 ELTIDSGGSYYMTHRRDSLYDFKVVGGGL-VRLGDNRTCTIKGTGKVKIQL----HNGSSFILEDVRYVPGLRRSLIS 247
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A6L2NS58_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NS58_TANCI) HSP 1 Score: 50.8 bits (120), Expect = 2.550e-5 Identity = 26/82 (31.71%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
D E ++SG ++HM+H R + +K G +V + D T ++ G G++ + + H +EDV YVPG+ R+L+S
Sbjct: 136 DEMTELVMNSGESYHMTHMRDFLYDFKVVDGG-SVRLGDNRTCTIKGTGKVNIQL----HNGSSFILEDVSYVPGLRRSLIS 212
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A2U1LCY9_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LCY9_ARTAN) HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5 Identity = 26/82 (31.71%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
D E +DSG ++HM+ R + +K G +V++ D T ++ G G+++M + H +EDV YVPG+ ++L+S
Sbjct: 266 DEMTELVMDSGGSYHMTPRRDFLYDFKDVDGG-SVKLGDNRTCTIKGTGKVKMQL----HDGSSFILEDVRYVPGLRKSLIS 342
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A225WC75_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WC75_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 4.830e-5 Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1
Query: 37 WELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
W LDSGA+ HM+ R+ ++ S M V + G +V G G + + + G + + DV Y+PG+ R LLS
Sbjct: 270 WLLDSGASSHMTFDRSDFEEFRPISGSMDVLVESGQRFAVSGVGVVRLQLRDGGV----IVVNDVLYIPGLDRKLLS 342
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A6H5I8J7_9HYME (CCHC-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8J7_9HYME) HSP 1 Score: 49.3 bits (116), Expect = 8.650e-5 Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 1
Query: 22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRV--------KMEDVEYVPGISRNLLS 267
D E W DSGA+ HM+ R S+Y G TV + D + G G + + KR+ ++E+V YVPGI +NLLS
Sbjct: 217 DISEVWLTDSGASEHMTFRRNWFSSYSPRDDGSTVSLGDNKEHKIVGVGTVRI---------KRLVNDKWLDGRIENVLYVPGIRKNLLS 297
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A2U1QDE5_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QDE5_ARTAN) HSP 1 Score: 49.3 bits (116), Expect = 9.120e-5 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
D E +DSG ++HM+ R + +K G +V++ D T ++ G G++++ + H +EDV YVPG+ ++L+S
Sbjct: 280 DEMTELVMDSGGSYHMTPRRDFLYDFKDVDGG-SVQLGDNRTCTIKGTGKVKIQL----HDGSSFILEDVRYVPGLRKSLIS 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12231.1704.1 >prot_H-elongata_contig12231.1704.1 ID=prot_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MVGEACGDRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLback to top mRNA from alignment at H-elongata_contig12231:8101..8367+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12231.1704.1 ID=mRNA_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig12231:8101..8367+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12231:8101..8367+ >mRNA_H-elongata_contig12231.1704.1 ID=mRNA_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig12231:8101..8367+ (Himanthalia elongata Himel1 dioecious)back to top |