mRNA_H-elongata_contig12231.1704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12231.1704.1
Unique NamemRNA_H-elongata_contig12231.1704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 54.3 bits (129), Expect = 1.640e-6
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   13 ACGDRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            A G    +W +D+GAT H++ TR     Y+  +   +++ A    L+ +G G IE       +   ++++EDV YVPGISRNL S
Sbjct:  261 ADGKPNIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFS 345          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-6
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   34 EWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            +W +D+GAT H++ TR     Y+  +   +++ A    L+ +G G IE       +   ++++EDV YVPGISRNL S
Sbjct:  295 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFS 372          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A699L2D6_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L2D6_TANCI)

HSP 1 Score: 51.6 bits (122), Expect = 1.380e-5
Identity = 25/78 (32.05%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   34 EWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            E  +DSG +++M+H R  +  +K    G+ V + D  T ++ G G++++ +    H      +EDV YVPG+ R+L+S
Sbjct:  175 ELTIDSGGSYYMTHRRDSLYDFKVVGGGL-VRLGDNRTCTIKGTGKVKIQL----HNGSSFILEDVRYVPGLRRSLIS 247          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A6L2NS58_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NS58_TANCI)

HSP 1 Score: 50.8 bits (120), Expect = 2.550e-5
Identity = 26/82 (31.71%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            D   E  ++SG ++HM+H R  +  +K    G +V + D  T ++ G G++ + +    H      +EDV YVPG+ R+L+S
Sbjct:  136 DEMTELVMNSGESYHMTHMRDFLYDFKVVDGG-SVRLGDNRTCTIKGTGKVNIQL----HNGSSFILEDVSYVPGLRRSLIS 212          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A2U1LCY9_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LCY9_ARTAN)

HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5
Identity = 26/82 (31.71%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            D   E  +DSG ++HM+  R  +  +K    G +V++ D  T ++ G G+++M +    H      +EDV YVPG+ ++L+S
Sbjct:  266 DEMTELVMDSGGSYHMTPRRDFLYDFKDVDGG-SVKLGDNRTCTIKGTGKVKMQL----HDGSSFILEDVRYVPGLRKSLIS 342          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A225WC75_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WC75_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.830e-5
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1
Query:   37 WELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            W LDSGA+ HM+  R+    ++  S  M V +  G   +V G G + + +   G     + + DV Y+PG+ R LLS
Sbjct:  270 WLLDSGASSHMTFDRSDFEEFRPISGSMDVLVESGQRFAVSGVGVVRLQLRDGGV----IVVNDVLYIPGLDRKLLS 342          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A6H5I8J7_9HYME (CCHC-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8J7_9HYME)

HSP 1 Score: 49.3 bits (116), Expect = 8.650e-5
Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 1
Query:   22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRV--------KMEDVEYVPGISRNLLS 267
            D  E W  DSGA+ HM+  R   S+Y     G TV + D     + G G + +         KR+        ++E+V YVPGI +NLLS
Sbjct:  217 DISEVWLTDSGASEHMTFRRNWFSSYSPRDDGSTVSLGDNKEHKIVGVGTVRI---------KRLVNDKWLDGRIENVLYVPGIRKNLLS 297          
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Match: A0A2U1QDE5_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QDE5_ARTAN)

HSP 1 Score: 49.3 bits (116), Expect = 9.120e-5
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   22 DRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTLSVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS 267
            D   E  +DSG ++HM+  R  +  +K    G +V++ D  T ++ G G++++ +    H      +EDV YVPG+ ++L+S
Sbjct:  280 DEMTELVMDSGGSYHMTPRRDFLYDFKDVDGG-SVQLGDNRTCTIKGTGKVKIQL----HDGSSFILEDVRYVPGLRKSLIS 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12231.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A4C1SBF3_EUMVA1.640e-635.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1TCT1_EUMVA2.910e-635.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A699L2D6_TANCI1.380e-532.05Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A6L2NS58_TANCI2.550e-531.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1LCY9_ARTAN3.440e-531.71Zinc finger, CCHC-type n=1 Tax=Artemisia annua Tax... [more]
A0A225WC75_9STRA4.830e-533.77Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
A0A6H5I8J7_9HYME8.650e-534.44CCHC-type domain-containing protein n=1 Tax=Tricho... [more]
A0A2U1QDE5_ARTAN9.120e-530.49Zinc finger, CCHC-type n=1 Tax=Artemisia annua Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12231contigH-elongata_contig12231:8101..8367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog164328.Phyra85925
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.8218215-CDS-H-elongata_contig12231:8100..83671622929719.8218215-CDS-H-elongata_contig12231:8100..8367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 8101..8367 +
1691679131.713928-CDS-H-elongata_contig12231:8100..83671691679131.713928-CDS-H-elongata_contig12231:8100..8367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 8101..8367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12231.1704.1prot_H-elongata_contig12231.1704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12231 8101..8367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12231.1704.1

>prot_H-elongata_contig12231.1704.1 ID=prot_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MVGEACGDRKEEWELDSGATFHMSHTRAGMSAYKKASPGMTVEIADGNTL
SVDGFGRIEMDVDQPGHTTKRVKMEDVEYVPGISRNLLS
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mRNA from alignment at H-elongata_contig12231:8101..8367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12231.1704.1 ID=mRNA_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig12231:8101..8367+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGAGAAGCTTGTGGTGATAGGAAGGAGGAATGGGAATTGGATTC AGGCGCCACATTCCACATGTCGCACACCAGGGCCGGAATGTCTGCGTACA AGAAGGCGTCGCCGGGGATGACCGTTGAGATCGCTGACGGAAACACTCTA TCGGTGGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCA CACAACCAAGAGGGTGAAGATGGAGGATGTTGAGTATGTGCCAGGAATTT CGCGGAACCTGCTATCT
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Coding sequence (CDS) from alignment at H-elongata_contig12231:8101..8367+

>mRNA_H-elongata_contig12231.1704.1 ID=mRNA_H-elongata_contig12231.1704.1|Name=mRNA_H-elongata_contig12231.1704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig12231:8101..8367+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGAGAAGCTTGTGGTGATAGGAAGGAGGAATGGGAATTGGATTC
AGGCGCCACATTCCACATGTCGCACACCAGGGCCGGAATGTCTGCGTACA
AGAAGGCGTCGCCGGGGATGACCGTTGAGATCGCTGACGGAAACACTCTA
TCGGTGGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCA
CACAACCAAGAGGGTGAAGATGGAGGATGTTGAGTATGTGCCAGGAATTT
CGCGGAACCTGCTATCTATGGTGGGAGAAGCTTGTGGTGATAGGAAGGAG
GAATGGGAATTGGATTCAGGCGCCACATTCCACATGTCGCACACCAGGGC
CGGAATGTCTGCGTACAAGAAGGCGTCGCCGGGGATGACCGTTGAGATCG
CTGACGGAAACACTCTATCGGTGGACGGGTTCGGAAGAATTGAGATGGAT
GTGGACCAACCGGGTCACACAACCAAGAGGGTGAAGATGGAGGATGTTGA
GTATGTGCCAGGAATTTCGCGGAACCTGCTATCT
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