mRNA_H-elongata_contig10015.17.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10015.17.1
Unique NamemRNA_H-elongata_contig10015.17.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10015.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10015contigH-elongata_contig10015:7069..9263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1918
Cds size1083
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10015.17.1prot_H-elongata_contig10015.17.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10015 7811..8893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.9514568-UTR-H-elongata_contig10015:7068..74221622929543.9514568-UTR-H-elongata_contig10015:7068..7422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 7069..7422 +
1691679062.3547537-UTR-H-elongata_contig10015:7068..74221691679062.3547537-UTR-H-elongata_contig10015:7068..7422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 7069..7422 +
1622929543.978374-UTR-H-elongata_contig10015:7699..78101622929543.978374-UTR-H-elongata_contig10015:7699..7810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 7700..7810 +
1691679062.4310377-UTR-H-elongata_contig10015:7699..78101691679062.4310377-UTR-H-elongata_contig10015:7699..7810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 7700..7810 +
1622929544.0906715-UTR-H-elongata_contig10015:8893..92631622929544.0906715-UTR-H-elongata_contig10015:8893..9263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 8894..9263 +
1691679062.4658475-UTR-H-elongata_contig10015:8893..92631691679062.4658475-UTR-H-elongata_contig10015:8893..9263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10015 8894..9263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.0784879-CDS-H-elongata_contig10015:7810..88931622929544.0784879-CDS-H-elongata_contig10015:7810..8893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10015 7811..8893 +
1691679062.4528341-CDS-H-elongata_contig10015:7810..88931691679062.4528341-CDS-H-elongata_contig10015:7810..8893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10015 7811..8893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10015.17.1

>prot_H-elongata_contig10015.17.1 ID=prot_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
MIDVTKRKLCATDGCSKQPNYGYAGSTKPEYCAKHALDAMINFKKGKMCA
SDGCCKQPSYGKAGSSKREYCSKHALDGMIHFKKRKMCAGDGCSKQPSYG
EAGSTKPEFCAKHALEGMIDVRKTIKCAGNGCSKQPSYEKAGSKKREYCA
KHSLDGMIYLKKGKMCAGDGCSKHPSYGEAGSTKPEFFAKHAMEGMICVR
KRKMCAGDECSKQPNYGNAGSTKPEYCAKHALEGMIDVQKKICAGDGCSR
KPTYGKAGSKKWEYCAQHALEGMGNVLNTRCAGDGSSKLERYGNAGSKRR
DYPAKNAMGVMVSTFPHNTPSSRKRVSKRSKTDNNVGAPFSDNALDVGLG
KSEVSVTKSK*
back to top

mRNA from alignment at H-elongata_contig10015:7069..9263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10015.17.1 ID=mRNA_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2195bp|location=Sequence derived from alignment at H-elongata_contig10015:7069..9263+ (Himanthalia elongata Himel1 dioecious)
CTTCGGGGTTGCCGGCAGCTCGAACCGGGATCACTGCGCGAATCATGCGC
TAAAGGGTATGGCTAACGTTAAGAATGAAATATATGCTGACTATGGATGC
TCGAACGGATCGAGCTACGGGAAGACCGGAAGCTCAAAATCCCAGTACCG
CGCCGAGCATGCTGTGGAAGGGATGGTCAACGTTGGTTCCAATGCATGTG
CTGCTGATGGATGTTATAGAATTGCGAGCGACGTAAACGTCGGAAGCACG
AAGCGAGAGTACTGCGGTAAGCATTCCTTGGAGGATATGGTCAATGTTAC
TAAACAGTGTACCATTGATGGATGTTCTAAGCAATCAAACTACGGAAATT
CTAGAAGTACCAAACAGGAGTACTGCGCTAAGCATGCCTTGATTGGGATA
ATTTACGTTCAGAAAAAAAAATGTGCTGGTAATGGATGTTGTAAGGAACC
AATCTACGGAAAGGCTGGCACCAAGAAACAGGAGTACTGCGCTAAGCATG
CATTGGATGGGATGATTAACTTTAAGAAGGAAATATGTGCTGGTGATGGA
TGTTCTAAGCAACCAAGCTACGGAAAGGTTGGCAGCAATAAACGGGAGTA
CTGCCCTAAGCATGCCTTAGAGGGGATGATTCACGTAAAGAAGAGGAAAA
TATGTGACGGTGATGGATGTTCCAAGCGACCACACTACGTAAAGGCTGGC
AGCACGAAACCGGAGTACTGTGCTAAGCATGCATTGGAGGGGATGATTGA
CGTAACCAAGAGGAAACTGTGTGCCACTGATGGATGCTCTAAGCAACCAA
ACTATGGATATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCC
TTGGATGCGATGATTAACTTTAAGAAGGGGAAAATGTGTGCCAGTGATGG
ATGTTGTAAGCAACCAAGCTACGGAAAGGCTGGCAGCTCGAAACGGGAGT
ACTGCTCTAAGCATGCATTAGATGGGATGATTCACTTTAAGAAGAGAAAA
ATGTGTGCCGGTGATGGATGCTCTAAGCAACCAAGCTATGGAGAAGCCGG
AAGCACGAAACCGGAATTTTGCGCGAAGCATGCCTTGGAGGGGATGATTG
ACGTTAGGAAGACGATAAAATGTGCCGGTAATGGATGTTCTAAGCAACCA
AGCTATGAAAAGGCTGGCAGCAAGAAACGGGAGTACTGCGCTAAGCATTC
ATTAGATGGGATGATTTACTTGAAGAAGGGGAAAATGTGTGCCGGTGATG
GATGCTCTAAGCATCCAAGCTACGGAGAAGCCGGAAGCACGAAACCGGAG
TTTTTCGCGAAGCATGCCATGGAGGGGATGATTTGCGTTAGGAAGAGGAA
GATGTGTGCCGGTGATGAATGTTCTAAGCAACCAAACTATGGAAATGCTG
GCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGATT
GACGTTCAAAAGAAAATATGTGCCGGTGATGGATGTTCTAGGAAACCAAC
CTACGGAAAGGCTGGCAGCAAGAAATGGGAGTACTGTGCTCAGCATGCCT
TGGAGGGAATGGGCAATGTTTTGAACACCAGGTGTGCCGGTGATGGAAGT
TCTAAGCTAGAGAGATACGGAAATGCCGGGAGCAAGAGGCGGGATTACCC
CGCAAAAAATGCTATGGGTGTCATGGTGTCCACCTTCCCTCACAATACTC
CAAGTTCGAGGAAGCGGGTGTCGAAAAGATCTAAAACCGATAATAACGTT
GGAGCCCCCTTTTCCGATAATGCATTAGATGTTGGTTTGGGGAAGTCAGA
GGTATCAGTGACTAAATCCAAGTAGGGGTGTTTTGCAAAGGAGTGAGTTG
ACGGTGTACTGGCGAACGGGAGCGGTGGTATTGCGCTCCGTTTTTTTTGT
TGTTGTAAGATATTCTTCTTTGGTATTTGTTTGGCTGACTACAGGCAGGA
GGTAAAAAAATCCGGTTGTTCATTACACATATTTGGAGCCCGAACAATTT
TATTCTTGTTATTGGTCGAACGAGAAGGACGTCGATAAAATTTTTAAAGC
ATTGCAACGAGCATCGAACATATAGGTAGTAGCTGGGTTGATTCAAGTCG
AGATAAATGATCCACAAATAATGCCAAATCCACAGTATTGAGGGGCCGAA
CACGTTCGATGTAACTTATGATCAACTTGGTCTCTTGAATACATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10015:7069..9263+

>mRNA_H-elongata_contig10015.17.1 ID=mRNA_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig10015:7069..9263+ (Himanthalia elongata Himel1 dioecious)
ATGATTGACGTAACCAAGAGGAAACTGTGTGCCACTGATGGATGCTCTAA
GCAACCAAACTATGGATATGCTGGCAGCACGAAACCGGAGTACTGCGCTA
AGCATGCCTTGGATGCGATGATTAACTTTAAGAAGGGGAAAATGTGTGCC
AGTGATGGATGTTGTAAGCAACCAAGCTACGGAAAGGCTGGCAGCTCGAA
ACGGGAGTACTGCTCTAAGCATGCATTAGATGGGATGATTCACTTTAAGA
AGAGAAAAATGTGTGCCGGTGATGGATGCTCTAAGCAACCAAGCTATGGA
GAAGCCGGAAGCACGAAACCGGAATTTTGCGCGAAGCATGCCTTGGAGGG
GATGATTGACGTTAGGAAGACGATAAAATGTGCCGGTAATGGATGTTCTA
AGCAACCAAGCTATGAAAAGGCTGGCAGCAAGAAACGGGAGTACTGCGCT
AAGCATTCATTAGATGGGATGATTTACTTGAAGAAGGGGAAAATGTGTGC
CGGTGATGGATGCTCTAAGCATCCAAGCTACGGAGAAGCCGGAAGCACGA
AACCGGAGTTTTTCGCGAAGCATGCCATGGAGGGGATGATTTGCGTTAGG
AAGAGGAAGATGTGTGCCGGTGATGAATGTTCTAAGCAACCAAACTATGG
AAATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGAGG
GAATGATTGACGTTCAAAAGAAAATATGTGCCGGTGATGGATGTTCTAGG
AAACCAACCTACGGAAAGGCTGGCAGCAAGAAATGGGAGTACTGTGCTCA
GCATGCCTTGGAGGGAATGGGCAATGTTTTGAACACCAGGTGTGCCGGTG
ATGGAAGTTCTAAGCTAGAGAGATACGGAAATGCCGGGAGCAAGAGGCGG
GATTACCCCGCAAAAAATGCTATGGGTGTCATGGTGTCCACCTTCCCTCA
CAATACTCCAAGTTCGAGGAAGCGGGTGTCGAAAAGATCTAAAACCGATA
ATAACGTTGGAGCCCCCTTTTCCGATAATGCATTAGATGTTGGTTTGGGG
AAGTCAGAGGTATCAGTGACTAAATCCAAGTAGATGATTGACGTAACCAA
GAGGAAACTGTGTGCCACTGATGGATGCTCTAAGCAACCAAACTATGGAT
ATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGATGCG
ATGATTAACTTTAAGAAGGGGAAAATGTGTGCCAGTGATGGATGTTGTAA
GCAACCAAGCTACGGAAAGGCTGGCAGCTCGAAACGGGAGTACTGCTCTA
AGCATGCATTAGATGGGATGATTCACTTTAAGAAGAGAAAAATGTGTGCC
GGTGATGGATGCTCTAAGCAACCAAGCTATGGAGAAGCCGGAAGCACGAA
ACCGGAATTTTGCGCGAAGCATGCCTTGGAGGGGATGATTGACGTTAGGA
AGACGATAAAATGTGCCGGTAATGGATGTTCTAAGCAACCAAGCTATGAA
AAGGCTGGCAGCAAGAAACGGGAGTACTGCGCTAAGCATTCATTAGATGG
GATGATTTACTTGAAGAAGGGGAAAATGTGTGCCGGTGATGGATGCTCTA
AGCATCCAAGCTACGGAGAAGCCGGAAGCACGAAACCGGAGTTTTTCGCG
AAGCATGCCATGGAGGGGATGATTTGCGTTAGGAAGAGGAAGATGTGTGC
CGGTGATGAATGTTCTAAGCAACCAAACTATGGAAATGCTGGCAGCACGA
AACCGGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGATTGACGTTCAA
AAGAAAATATGTGCCGGTGATGGATGTTCTAGGAAACCAACCTACGGAAA
GGCTGGCAGCAAGAAATGGGAGTACTGTGCTCAGCATGCCTTGGAGGGAA
TGGGCAATGTTTTGAACACCAGGTGTGCCGGTGATGGAAGTTCTAAGCTA
GAGAGATACGGAAATGCCGGGAGCAAGAGGCGGGATTACCCCGCAAAAAA
TGCTATGGGTGTCATGGTGTCCACCTTCCCTCACAATACTCCAAGTTCGA
GGAAGCGGGTGTCGAAAAGATCTAAAACCGATAATAACGTTGGAGCCCCC
TTTTCCGATAATGCATTAGATGTTGGTTTGGGGAAGTCAGAGGTATCAGT
GACTAAATCCAAGTAG
back to top