mRNA_H-elongata_contig95946.16991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95946.16991.1
Unique NamemRNA_H-elongata_contig95946.16991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.280e-20
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFKAQKAMMKQQEQVDDAVGDVDDLDD 261
            E++NS MM+E  G+PEK+E++R+AIL+NP LKQAM+QLPGF +M+E P+KW E+M  A EM + Q++M++ Q       GDVDDLDD
Sbjct:  154 EVLNSPMMDEFFGSPEKIEESRKAILENPMLKQAMAQLPGFSEMLEDPDKWMESMLQAKEMLEQQRSMLQDQGGAP-LGGDVDDLDD 239          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.230e-16
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1
Query:   13 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVES 141
            SDMMEEVLGNPEKMEQARQAILDNPTLKQAM+QLPGF DM++S
Sbjct:  164 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMTQLPGFADMIDS 206          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7S1ZLX3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLX3_TRICV)

HSP 1 Score: 66.6 bits (161), Expect = 3.010e-11
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFK 189
            EM+NS M ++ + +PE++E++RQ IL+NP +K  M  +PG  D++  PEKWRE M+ A EM+K
Sbjct:  168 EMVNSPMFQQYMNDPEQLEKSRQMILENPMMKSMMGSMPGMEDILNDPEKWRETMQAAGEMYK 230          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7S1UXN8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UXN8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.030e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFK------AQKAMMKQ 213
            +MM++ M +E + +PEK+EQARQ +L NP LK  + Q+PG  D+V  P+ WRE M+ A+ M++       +KAMM Q
Sbjct:  140 QMMSNPMFKEFMTDPEKLEQARQMMLQNPMLKGMLGQVPGMEDVVNDPDAWRETMQAAMTMYQNMDPEDVKKAMMGQ 216          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7S4D8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8F3_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 4.280e-9
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFKAQ 195
            +M +SDM  ++ G+PEK+E+ RQA++ NP +KQ    +PGF +++  P+ +RE M  A +  KAQ
Sbjct:   26 QMYDSDMFSQLFGDPEKLEETRQALISNPMMKQMFGSMPGFEEILNDPDAFREAMTTAQQEMKAQ 90          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.030e-8
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMF 186
            EMM+S + +E + +PEK+EQ+RQ IL NP +K  M+ +PGF +++    KWRE M  A +M+
Sbjct:  196 EMMSSPLFQEYMKDPEKLEQSRQMILQNPLMKSMMAGMPGFDEILNDEVKWRETMIAAADMY 257          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A2V3IQY5_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQY5_9FLOR)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-7
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   10 NSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFKAQKAMMKQQEQVDDAVGD 243
            N+ M+++ L +PEK EQ+R AIL+NP +K+ +   P F  +V  P KWR++M+ A ++FK     + +++  DDA GD
Sbjct:  192 NTPMLQDYLNDPEKQEQSRDAILNNPYMKKLLESDPEFKKVVSDPSKWRDSMDAAKKLFK-----VSEKQADDDADGD 264          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: M1VHM4_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VHM4_CYAM1)

HSP 1 Score: 55.5 bits (132), Expect = 6.170e-7
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 MMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFKAQ 195
            +  S  M+E L + EK E++RQA+L+NP L+Q M   P F ++VE P+KW E+M  A E+F  Q
Sbjct:  213 LWESPAMQEYLSSAEKQEESRQALLNNPFLRQWMDADPQFREVVEDPQKWAESMRAARELFAQQ 276          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7J7IJI0_9RHOD (Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJI0_9RHOD)

HSP 1 Score: 53.9 bits (128), Expect = 2.150e-6
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 MMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKWRENMEMALEMFKAQ 195
            + +S  M++ L + EK E++RQA+L+NP L+Q M   P F ++VE P KW E+M  A E+F  Q
Sbjct:  202 LWDSPAMQDYLSSEEKQEESRQALLNNPFLRQWMDADPQFREVVEDPRKWAESMRAAKELFAQQ 265          
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Match: A0A7S0C3I0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3I0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.530e-6
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 EMMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQ----------LPGFIDMVESPEKWRENMEMALEMFKA 192
            +++NS + +E + +PEK+E++RQ IL NP +K  MS           +PGF D++ S EK+R+ M+   EM+K+
Sbjct:   35 DIVNSAIFQEYVSSPEKIEESRQMILGNPMMKTMMSGAGNAGGGMGGVPGFDDILNSEEKFRDTMQQMAEMYKS 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95946.16991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A836CH29_9STRA9.280e-2055.17Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
D8LE10_ECTSI7.230e-1690.70Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S1ZLX3_TRICV3.010e-1147.62Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1UXN8_9STRA3.030e-1044.16Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4D8F3_HETAK4.280e-941.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2N0G5_9STRA3.030e-845.16Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A2V3IQY5_9FLOR1.290e-739.74Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
M1VHM4_CYAM16.170e-745.31Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m... [more]
A0A7J7IJI0_9RHOD2.150e-643.75Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus ya... [more]
A0A7S0C3I0_9STRA8.530e-637.84Hypothetical protein (Fragment) n=2 Tax=Proboscia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95946contigH-elongata_contig95946:1761..2369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog2880.D8LE10
KEGG koko:K04523
KEGG Pathwayko04141,map04141
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95946.16991.1prot_H-elongata_contig95946.16991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95946 1761..2366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931353.3464859-CDS-H-elongata_contig95946:1760..18951622931353.3464859-CDS-H-elongata_contig95946:1760..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95946 1761..1895 -
1691679802.1328285-CDS-H-elongata_contig95946:1760..18951691679802.1328285-CDS-H-elongata_contig95946:1760..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95946 1761..1895 -
1622931353.3639147-CDS-H-elongata_contig95946:2237..23661622931353.3639147-CDS-H-elongata_contig95946:2237..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95946 2238..2366 -
1691679802.1442955-CDS-H-elongata_contig95946:2237..23661691679802.1442955-CDS-H-elongata_contig95946:2237..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95946 2238..2366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931353.3844597-UTR-H-elongata_contig95946:2366..23691622931353.3844597-UTR-H-elongata_contig95946:2366..2369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95946 2367..2369 -
1691679802.1539593-UTR-H-elongata_contig95946:2366..23691691679802.1539593-UTR-H-elongata_contig95946:2366..2369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95946 2367..2369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95946.16991.1

>prot_H-elongata_contig95946.16991.1 ID=prot_H-elongata_contig95946.16991.1|Name=mRNA_H-elongata_contig95946.16991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MMNSDMMEEVLGNPEKMEQARQAILDNPTLKQAMSQLPGFIDMVESPEKW
RENMEMALEMFKAQKAMMKQQEQVDDAVGDVDDLDDD*
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mRNA from alignment at H-elongata_contig95946:1761..2369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95946.16991.1 ID=mRNA_H-elongata_contig95946.16991.1|Name=mRNA_H-elongata_contig95946.16991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig95946:1761..2369- (Himanthalia elongata Himel1 dioecious)
GAAATGATGAACTCGGACATGATGGAAGAGGTGCTGGGCAATCCAGAAAA GATGGAACAGGCCCGCCAGGCTATCCTCGATAATCCTACCCTCAAGCAGG CCATGTCGCAGCTCCCCGGGTTCATCGACATGGTAGGAAGGCGTTGTTTG CTGCTGCTCCGGCTCTTAAAAGCCCCGTAAATCATCCGTAATTTCGACAC AGCTTCACGACCGGCCGTCTAAAGCAAGACTGCTCCGGCTCTGTTCTATC GCTGGTGCTAACGCCCCCTCCACCCCTCCCCTTTTTTCTATAGGTAGACT TGATGTCACTGCAACGTATCGTAAATAATTCGTCTTCCGTGTAGTAGGAC AAAAGAAAAAAGGCTTTCAGTCGCACGAATTGCGGCAAATGGTCCTTGGA GAGGTCCAAGCCATCCCCCCCCCCCCTGCTGGTGTCGTATCTTGATGTCA CTGGTGATGTTATTCGTTCTTAAGGTTGAATCTCCGGAGAAGTGGCGGGA GAACATGGAGATGGCGTTGGAAATGTTTAAGGCCCAGAAAGCGATGATGA AGCAGCAGGAGCAAGTAGACGACGCCGTTGGTGACGTCGACGACCTGGAC GATGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig95946:1761..2369-

>mRNA_H-elongata_contig95946.16991.1 ID=mRNA_H-elongata_contig95946.16991.1|Name=mRNA_H-elongata_contig95946.16991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig95946:1761..2369- (Himanthalia elongata Himel1 dioecious)
ATGATGAACTCGGACATGATGGAAGAGGTGCTGGGCAATCCAGAAAAGAT
GGAACAGGCCCGCCAGGCTATCCTCGATAATCCTACCCTCAAGCAGGCCA
TGTCGCAGCTCCCCGGGTTCATCGACATGATGATGAACTCGGACATGATG
GAAGAGGTGCTGGGCAATCCAGAAAAGATGGAACAGGCCCGCCAGGCTAT
CCTCGATAATCCTACCCTCAAGCAGGCCATGTCGCAGCTCCCCGGGTTCA
TCGACATGGTTGAATCTCCGGAGAAGTGGCGGGAGAACATGGAGATGGCG
TTGGAAATGTTTAAGGCCCAGAAAGCGATGATGAAGCAGCAGGAGCAAGT
AGACGACGCCGTTGGTGACGTCGACGACCTGGACGATGACTGAGTTGAAT
CTCCGGAGAAGTGGCGGGAGAACATGGAGATGGCGTTGGAAATGTTTAAG
GCCCAGAAAGCGATGATGAAGCAGCAGGAGCAAGTAGACGACGCCGTTGG
TGACGTCGACGACCTGGACGATGACTGA
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