mRNA_H-elongata_contig9592.16989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9592.16989.1
Unique NamemRNA_H-elongata_contig9592.16989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9592.16989.1 vs. uniprot
Match: UPI0009047068 (uncharacterized protein LOC109239630 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009047068)

HSP 1 Score: 53.9 bits (128), Expect = 9.960e-7
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    1 FKRLVVELEKQLRVGNQHGFFQNIKSVQLEETKKVESQCVRDEKGTLLRDKGLVHERWMRFFHSLLNAKSDM 216
            F RL  ELE +   G     F+  K+  L++ K     C++DEKG +L +KG++ +RW  +FHSLLN + DM
Sbjct:  182 FGRLYEELEGR---GGDKRLFRLAKARDLDQVK-----CIKDEKGRVLSNKGIIRQRWQTYFHSLLNEEGDM 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9592.16989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00090470689.960e-740.28uncharacterized protein LOC109239630 n=1 Tax=Nicot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9592contigH-elongata_contig9592:222..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931353.2146442-CDS-H-elongata_contig9592:221..4371622931353.2146442-CDS-H-elongata_contig9592:221..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9592 222..437 -
1691679802.0963495-CDS-H-elongata_contig9592:221..4371691679802.0963495-CDS-H-elongata_contig9592:221..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9592 222..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9592.16989.1prot_H-elongata_contig9592.16989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9592 222..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9592.16989.1

>prot_H-elongata_contig9592.16989.1 ID=prot_H-elongata_contig9592.16989.1|Name=mRNA_H-elongata_contig9592.16989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
FKRLVVELEKQLRVGNQHGFFQNIKSVQLEETKKVESQCVRDEKGTLLRD
KGLVHERWMRFFHSLLNAKSDM
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mRNA from alignment at H-elongata_contig9592:222..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9592.16989.1 ID=mRNA_H-elongata_contig9592.16989.1|Name=mRNA_H-elongata_contig9592.16989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig9592:222..437- (Himanthalia elongata Himel1 dioecious)
TTCAAACGCCTCGTTGTTGAGTTGGAGAAGCAGCTGCGCGTGGGAAACCA
GCACGGATTCTTCCAAAACATCAAATCGGTGCAACTGGAGGAGACGAAGA
AGGTTGAATCACAGTGCGTCCGCGACGAGAAAGGAACACTGCTACGCGAC
AAAGGGCTTGTCCACGAGAGGTGGATGCGATTCTTCCACTCGCTGTTGAA
CGCGAAATCCGACATG
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Coding sequence (CDS) from alignment at H-elongata_contig9592:222..437-

>mRNA_H-elongata_contig9592.16989.1 ID=mRNA_H-elongata_contig9592.16989.1|Name=mRNA_H-elongata_contig9592.16989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig9592:222..437- (Himanthalia elongata Himel1 dioecious)
TTCAAACGCCTCGTTGTTGAGTTGGAGAAGCAGCTGCGCGTGGGAAACCA
GCACGGATTCTTCCAAAACATCAAATCGGTGCAACTGGAGGAGACGAAGA
AGGTTGAATCACAGTGCGTCCGCGACGAGAAAGGAACACTGCTACGCGAC
AAAGGGCTTGTCCACGAGAGGTGGATGCGATTCTTCCACTCGCTGTTGAA
CGCGAAATCCGACATGTTCAAACGCCTCGTTGTTGAGTTGGAGAAGCAGC
TGCGCGTGGGAAACCAGCACGGATTCTTCCAAAACATCAAATCGGTGCAA
CTGGAGGAGACGAAGAAGGTTGAATCACAGTGCGTCCGCGACGAGAAAGG
AACACTGCTACGCGACAAAGGGCTTGTCCACGAGAGGTGGATGCGATTCT
TCCACTCGCTGTTGAACGCGAAATCCGACATG
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