mRNA_H-elongata_contig95896.16986.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95896.16986.1
Unique NamemRNA_H-elongata_contig95896.16986.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95896.16986.1 vs. uniprot
Match: D7G1M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M1_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.910e-64
Identity = 111/155 (71.61%), Postives = 122/155 (78.71%), Query Frame = 1 
Query:    1 WRREVKGRAEDVSRAGLRKLRELSDGDAMVAEIIATIVHDVITDGQELLTTEASVILQSCPRLAEAAEAGELTAALSSSA--RAEAENEFLLQTLNAEVIAELHTTWPAAVKKWRQKALAVEKYRSTNPTANAAVYTYMTNCCLRQGMWEVAYEG 459
            WRRE    AE  SRAGLR LR+  D  A  ++ I TI +DVI DGQELLTTEASVILQ CPRLAEAA+AGEL A LSSSA  RA  E++FLL+ L  EV+AEL T W  +VKKWRQKALAVEKYRSTNPTANA VYTYMTNCC RQGMWEVAY+G
Sbjct:   37 WRREGGQAAEGESRAGLRALRKQIDEGAPASQTIGTIANDVIVDGQELLTTEASVILQRCPRLAEAAKAGELLAGLSSSANTRAGGESDFLLENLEKEVVAELDTPWDVSVKKWRQKALAVEKYRSTNPTANAVVYTYMTNCCCRQGMWEVAYDG 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95896.16986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M1_ECTSI1.910e-6471.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95896contigH-elongata_contig95896:152..1164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000950.1
Exons3
Model size471
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95896.16986.1prot_H-elongata_contig95896.16986.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95896 152..1164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.8326712-CDS-H-elongata_contig95896:151..2841622931352.8326712-CDS-H-elongata_contig95896:151..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 152..284 -
1691679801.9578607-CDS-H-elongata_contig95896:151..2841691679801.9578607-CDS-H-elongata_contig95896:151..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 152..284 -
1622931352.853979-CDS-H-elongata_contig95896:531..7131622931352.853979-CDS-H-elongata_contig95896:531..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 532..713 -
1691679801.966967-CDS-H-elongata_contig95896:531..7131691679801.966967-CDS-H-elongata_contig95896:531..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 532..713 -
1622931352.8933327-CDS-H-elongata_contig95896:1008..11641622931352.8933327-CDS-H-elongata_contig95896:1008..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 1009..1164 -
1691679801.9772694-CDS-H-elongata_contig95896:1008..11641691679801.9772694-CDS-H-elongata_contig95896:1008..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95896 1009..1164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95896.16986.1

>prot_H-elongata_contig95896.16986.1 ID=prot_H-elongata_contig95896.16986.1|Name=mRNA_H-elongata_contig95896.16986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
WRREVKGRAEDVSRAGLRKLRELSDGDAMVAEIIATIVHDVITDGQELLT
TEASVILQSCPRLAEAAEAGELTAALSSSARAEAENEFLLQTLNAEVIAE
LHTTWPAAVKKWRQKALAVEKYRSTNPTANAAVYTYMTNCCLRQGMWEVA
YEGEIFA
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mRNA from alignment at H-elongata_contig95896:152..1164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95896.16986.1 ID=mRNA_H-elongata_contig95896.16986.1|Name=mRNA_H-elongata_contig95896.16986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-elongata_contig95896:152..1164- (Himanthalia elongata Himel1 dioecious)
TGGCGACGGGAAGTTAAGGGACGCGCCGAGGACGTTTCGAGGGCGGGACT
CCGGAAGCTGCGCGAACTGTCGGACGGGGATGCTATGGTGGCGGAGATTA
TCGCAACCATCGTGCACGACGTGATCACTGACGGTCAGGAGCTCTTGACG
ACCGAGGTATGGCGATCCCTTGCTGTTTCTTATGTCTCGAGTTCCCAAAG
AGTTGTCGAGGCGATGACGAGCTCGGATATTTAAACTTCTTCTCTGTGCG
ACGCCTTTCTGCCCTTTATTTTTGCATTTCCTAGACGGCCACACACACCC
TCCACGCTGATAGTCGTAAAGCATACAACAGCAAACGTGAGGGTCGGTCC
CCTTCCTCATTCCTTTCCAATTGCACATAGTCCACATCTACATCTCCTCG
ATACGGTCTTGCTTTTGTTGTTGATTTTCTTGTGTACATGCAATGCCGCA
GGCAAGCGTCATCCTTCAGTCATGCCCGCGTCTAGCGGAGGCAGCCGAAG
CCGGCGAGCTGACCGCGGCACTCTCGTCCTCGGCACGCGCCGAGGCCGAG
AACGAGTTCCTGCTGCAGACCCTGAACGCGGAAGTCATCGCCGAGCTGCA
CACGACTTGGCCCGCTGCGGTGAAGAAGTGGAGGTACGTACAGTACTTGT
TTGATGTTTGAAATAAAAGTCATCAACATATCCCCTTGGATGTGTCTGTT
TCTTGTACTGCAGTCGATGAAAGCGGCGGTACTAAAGTGTAGGGATTGAA
GAAGCACGTCGACGGAAGAGTTTAACCCGATCGAATCAAGCCAACGACAC
TTTAAAATACTTGTAAGCTAAGCGGCCATAAAGGGATCGCTCGCGCGTAA
CCATCCCCATGAACCCATGGACGTATTCAGACAAAAGGCTTTGGCGGTCG
AGAAGTATCGAAGCACGAACCCGACGGCGAACGCCGCTGTCTATACGTAC
ATGACCAACTGCTGCCTCAGACAGGGCATGTGGGAGGTGGCGTACGAAGG
TGAAATTTTCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig95896:152..1164-

>mRNA_H-elongata_contig95896.16986.1 ID=mRNA_H-elongata_contig95896.16986.1|Name=mRNA_H-elongata_contig95896.16986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig95896:152..1164- (Himanthalia elongata Himel1 dioecious)
TGGCGACGGGAAGTTAAGGGACGCGCCGAGGACGTTTCGAGGGCGGGACT
CCGGAAGCTGCGCGAACTGTCGGACGGGGATGCTATGGTGGCGGAGATTA
TCGCAACCATCGTGCACGACGTGATCACTGACGGTCAGGAGCTCTTGACG
ACCGAGTGGCGACGGGAAGTTAAGGGACGCGCCGAGGACGTTTCGAGGGC
GGGACTCCGGAAGCTGCGCGAACTGTCGGACGGGGATGCTATGGTGGCGG
AGATTATCGCAACCATCGTGCACGACGTGATCACTGACGGTCAGGAGCTC
TTGACGACCGAGGCAAGCGTCATCCTTCAGTCATGCCCGCGTCTAGCGGA
GGCAGCCGAAGCCGGCGAGCTGACCGCGGCACTCTCGTCCTCGGCACGCG
CCGAGGCCGAGAACGAGTTCCTGCTGCAGACCCTGAACGCGGAAGTCATC
GCCGAGCTGCACACGACTTGGCCCGCTGCGGTGAAGAAGTGGAGGCAAGC
GTCATCCTTCAGTCATGCCCGCGTCTAGCGGAGGCAGCCGAAGCCGGCGA
GCTGACCGCGGCACTCTCGTCCTCGGCACGCGCCGAGGCCGAGAACGAGT
TCCTGCTGCAGACCCTGAACGCGGAAGTCATCGCCGAGCTGCACACGACT
TGGCCCGCTGCGGTGAAGAAGTGGAGACAAAAGGCTTTGGCGGTCGAGAA
GTATCGAAGCACGAACCCGACGGCGAACGCCGCTGTCTATACGTACATGA
CCAACTGCTGCCTCAGACAGGGCATGTGGGAGGTGGCGTACGAAGGTGAA
ATTTTCGCAACAAAAGGCTTTGGCGGTCGAGAAGTATCGAAGCACGAACC
CGACGGCGAACGCCGCTGTCTATACGTACATGACCAACTGCTGCCTCAGA
CAGGGCATGTGGGAGGTGGCGTACGAAGGTGAAATTTTCGCA
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