mRNA_H-elongata_contig95844.16983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95844.16983.1
Unique NamemRNA_H-elongata_contig95844.16983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A353RRK0_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353RRK0_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-9
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 VRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIGEL 186
            +   + DAL+E+Y+S  G+SWTNN  W T   +  WYGV VKD + S + L+ NNL+G +
Sbjct:  272 IPKTECDALVELYNSTNGTSWTNNFHWLTYNPIDAWYGVYVKDGHVSSIGLQSNNLVGTI 331          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: UPI001659326E (leucine-rich repeat domain-containing protein n=1 Tax=Flavobacterium johnsoniae TaxID=986 RepID=UPI001659326E)

HSP 1 Score: 61.2 bits (147), Expect = 2.250e-9
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    7 VRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEW--------YGVDVKDNNFSGLDLKLNNL 174
            +  +++DALL IY+SLGGS W NN+GW  +  +A W        YGV V+DN+   LDL  N L
Sbjct:   98 IPQSEKDALLAIYNSLGGSGWINNTGWNASNPVASWDEQTGTGWYGVTVEDNHVVRLDLNYNRL 161          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A3B0BVE1_9FLAO (Uncharacterized protein n=2 Tax=Ulvibacterium marinum TaxID=2419782 RepID=A0A3B0BVE1_9FLAO)

HSP 1 Score: 61.2 bits (147), Expect = 2.270e-9
Identity = 23/63 (36.51%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 CWVRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDN-NFSGLDLKLNNLIGEL 186
            C V + +  AL+++++++GG++WT N+GW T+A + +W+G+   D  +  G+DL  N L GE+
Sbjct: 2652 CGVSDLERQALIDLFEAMGGTNWTTNTGWNTDAPVCDWFGITTDDEAHVIGVDLPDNGLRGEI 2714          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A7X4FIX1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FIX1_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 4.190e-9
Identity = 24/54 (44.44%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   25 DALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIGEL 186
            +AL+ +Y++  G +WTNN+ W T+  ++ WYGV+V D + + L+L+ NNL GEL
Sbjct:  784 EALVALYNATDGPNWTNNTNWLTDNDISTWYGVEVSDGSVTELELRENNLTGEL 837          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: UPI00125BC966 (hypothetical protein n=1 Tax=Desulfoluna spongiiphila TaxID=419481 RepID=UPI00125BC966)

HSP 1 Score: 60.1 bits (144), Expect = 5.750e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   25 DALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVD--VKDNNFSGLDLKLNNLIGEL 186
            DAL+ +Y+S  G  WTNNSGWGT+  + +W+G+D  +  + FS LDL  NNL G L
Sbjct:  272 DALMALYESTNGPGWTNNSGWGTDEPVNDWFGIDYALSSSTFS-LDLSSNNLRGTL 326          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A2D6AKW1_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=3 Tax=Bacteria TaxID=2 RepID=A0A2D6AKW1_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 7.770e-9
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   19 DEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIGE 183
            D  ALL +YDSLGG++WT+ + W + A+L +W GV + ++  +GLDL  NNL+G+
Sbjct:    6 DSAALLTLYDSLGGATWTSTN-WKSGANLQDWSGVTLTNDRVTGLDLSSNNLVGK 59          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A2E8MW22_9RICK (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8MW22_9RICK)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-8
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   19 DEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIG 180
            D  ALL +YDSLGG++WT+ + W + A+L +W GV + ++  +GLDL  NNL+G
Sbjct: 4789 DSAALLTLYDSLGGATWTSTN-WKSGANLQDWSGVTLTNDRVTGLDLSSNNLVG 4841          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A7Y5H5Z4_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7Y5H5Z4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 9.560e-8
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    7 VRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIGEL 186
            V  AD  AL+ +YDS GG++WT  + W T   ++ W+GV V  N  + +DL  NNL G +
Sbjct:   24 VLTADSVALVNLYDSTGGTNWTTKTNWKT-GPVSSWFGVTVGGNRVTAIDLNNNNLTGRI 82          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: UPI001CD561E9 (DUF6443 domain-containing protein n=1 Tax=Cesiribacter sp. SM1 TaxID=2861196 RepID=UPI001CD561E9)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-7
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 NADEDALLEIYDSLGGSSWTNNSGW--GTNAS-LAEWYGVDVKDNNFSGLDLKLNNLIGEL 186
            N +  ALL +Y+S GG+SW++++ W  GT A+  A W+G+ V++ + SG+DL  NNL G +
Sbjct:   43 NIEYQALLSLYNSTGGNSWSDDTNWLQGTTAADFATWHGITVENGDVSGIDLGRNNLQGSI 103          
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Match: A0A2N5JLQ8_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JLQ8_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.210e-7
Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:    7 VRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSGLDLKLNNLIGEL 186
            V  A+  ALL +Y +  G++W +NSGWG N  +  WYGV   D + S L L  N L G +
Sbjct:  198 VPQAECGALLALYTATDGANWKDNSGWGQNNGVCNWYGVSCADGSVSALYLDTNQLRGAI 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95844.16983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353RRK0_9CHLR1.200e-945.00Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
UPI001659326E2.250e-945.31leucine-rich repeat domain-containing protein n=1 ... [more]
A0A3B0BVE1_9FLAO2.270e-936.51Uncharacterized protein n=2 Tax=Ulvibacterium mari... [more]
A0A7X4FIX1_9BACT4.190e-944.44Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
UPI00125BC9665.750e-950.00hypothetical protein n=1 Tax=Desulfoluna spongiiph... [more]
A0A2D6AKW1_9BACT7.770e-947.27Por_Secre_tail domain-containing protein (Fragment... [more]
A0A2E8MW22_9RICK1.080e-848.15Fibronectin type-III domain-containing protein (Fr... [more]
A0A7Y5H5Z4_9BACT9.560e-841.67T9SS type A sorting domain-containing protein n=1 ... [more]
UPI001CD561E91.800e-742.62DUF6443 domain-containing protein n=1 Tax=Cesiriba... [more]
A0A2N5JLQ8_9CYAN2.210e-741.67Uncharacterized protein (Fragment) n=1 Tax=Cyanoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95844contigH-elongata_contig95844:1094..1288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog2880.D8LK68
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC6.3.1.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.4157596-CDS-H-elongata_contig95844:1093..12881622931352.4157596-CDS-H-elongata_contig95844:1093..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95844 1094..1288 +
1691679801.754259-CDS-H-elongata_contig95844:1093..12881691679801.754259-CDS-H-elongata_contig95844:1093..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95844 1094..1288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95844.16983.1prot_H-elongata_contig95844.16983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95844 1094..1288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95844.16983.1

>prot_H-elongata_contig95844.16983.1 ID=prot_H-elongata_contig95844.16983.1|Name=mRNA_H-elongata_contig95844.16983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
CWVRNADEDALLEIYDSLGGSSWTNNSGWGTNASLAEWYGVDVKDNNFSG
LDLKLNNLIGELRR*
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mRNA from alignment at H-elongata_contig95844:1094..1288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95844.16983.1 ID=mRNA_H-elongata_contig95844.16983.1|Name=mRNA_H-elongata_contig95844.16983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig95844:1094..1288+ (Himanthalia elongata Himel1 dioecious)
TGTTGGGTGCGCAATGCAGATGAAGATGCACTGCTTGAAATCTATGATTC GCTGGGAGGCTCTTCGTGGACGAACAACTCCGGGTGGGGTACTAACGCAT CCCTAGCTGAATGGTACGGCGTCGACGTTAAGGATAACAACTTCTCGGGG TTGGATCTCAAATTAAACAATCTCATCGGTGAGTTGAGGAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig95844:1094..1288+

>mRNA_H-elongata_contig95844.16983.1 ID=mRNA_H-elongata_contig95844.16983.1|Name=mRNA_H-elongata_contig95844.16983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig95844:1094..1288+ (Himanthalia elongata Himel1 dioecious)
TGTTGGGTGCGCAATGCAGATGAAGATGCACTGCTTGAAATCTATGATTC
GCTGGGAGGCTCTTCGTGGACGAACAACTCCGGGTGGGGTACTAACGCAT
CCCTAGCTGAATGGTACGGCGTCGACGTTAAGGATAACAACTTCTCGGGG
TTGGATCTCAAATTAAACAATCTCATCGGTGAGTTGAGGAGATAATGTTG
GGTGCGCAATGCAGATGAAGATGCACTGCTTGAAATCTATGATTCGCTGG
GAGGCTCTTCGTGGACGAACAACTCCGGGTGGGGTACTAACGCATCCCTA
GCTGAATGGTACGGCGTCGACGTTAAGGATAACAACTTCTCGGGGTTGGA
TCTCAAATTAAACAATCTCATCGGTGAGTTGAGGAGATAA
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