mRNA_H-elongata_contig95843.16982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95843.16982.1
Unique NamemRNA_H-elongata_contig95843.16982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95843.16982.1 vs. uniprot
Match: D8LKI3_ECTSI (Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI3_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 9.200e-5
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   52 HSLFDFGSEGDLNLAEVTVLLRTVLLASAK 141
            HSLFDFG +GDL+L EVT+L+RT L+A AK
Sbjct:    2 HSLFDFGLDGDLHLPEVTILVRTALIACAK 31
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95843.16982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKI3_ECTSI9.200e-570.00Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95843contigH-elongata_contig95843:175..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.3530836-CDS-H-elongata_contig95843:174..3211622931352.3530836-CDS-H-elongata_contig95843:174..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95843 175..321 -
1691679801.7235527-CDS-H-elongata_contig95843:174..3211691679801.7235527-CDS-H-elongata_contig95843:174..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95843 175..321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.3664796-UTR-H-elongata_contig95843:321..3241622931352.3664796-UTR-H-elongata_contig95843:321..324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95843 322..324 -
1691679801.7356775-UTR-H-elongata_contig95843:321..3241691679801.7356775-UTR-H-elongata_contig95843:321..324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95843 322..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95843.16982.1prot_H-elongata_contig95843.16982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95843 175..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95843.16982.1

>prot_H-elongata_contig95843.16982.1 ID=prot_H-elongata_contig95843.16982.1|Name=mRNA_H-elongata_contig95843.16982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MALICSASIAEKVDFAHSLFDFGSEGDLNLAEVTVLLRTVLLASAKVK*
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mRNA from alignment at H-elongata_contig95843:175..324-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95843.16982.1 ID=mRNA_H-elongata_contig95843.16982.1|Name=mRNA_H-elongata_contig95843.16982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig95843:175..324- (Himanthalia elongata Himel1 dioecious)
GCCATGGCTTTGATCTGCTCTGCAAGCATTGCTGAGAAGGTAGATTTCGC
GCACTCGTTGTTCGACTTCGGTTCTGAAGGCGATTTGAACCTGGCTGAGG
TGACGGTCCTCCTGAGGACAGTCCTTTTGGCGAGTGCCAAGGTGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig95843:175..324-

>mRNA_H-elongata_contig95843.16982.1 ID=mRNA_H-elongata_contig95843.16982.1|Name=mRNA_H-elongata_contig95843.16982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig95843:175..324- (Himanthalia elongata Himel1 dioecious)
ATGGCTTTGATCTGCTCTGCAAGCATTGCTGAGAAGGTAGATTTCGCGCA
CTCGTTGTTCGACTTCGGTTCTGAAGGCGATTTGAACCTGGCTGAGGTGA
CGGTCCTCCTGAGGACAGTCCTTTTGGCGAGTGCCAAGGTGAAATAAATG
GCTTTGATCTGCTCTGCAAGCATTGCTGAGAAGGTAGATTTCGCGCACTC
GTTGTTCGACTTCGGTTCTGAAGGCGATTTGAACCTGGCTGAGGTGACGG
TCCTCCTGAGGACAGTCCTTTTGGCGAGTGCCAAGGTGAAATAA
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