prot_H-elongata_contig95830.16981.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95830.16981.1
Unique Nameprot_H-elongata_contig95830.16981.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length258
Homology
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BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI0009049654 (uncharacterized protein LOC109222647 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009049654)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-15
Identity = 69/240 (28.75%), Postives = 113/240 (47.08%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADGTKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRRE-YMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAK----SLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLMYR 258
            W ++   LK++ PLF+++RL D  K  A   +Y     +D  KEA        G   + + + + +D R E  +H P++ A   L PEY+ +  A+ N R     L    ++L+ +         + V+D        K++ +   Y      G   L  AK    + +  EWWN  G + +P L ++A RILS+  ++AGCERNWS+   +   K  R+    + +LVYV+ N  L  R
Sbjct:  332 WNQVVYILKIMGPLFKVLRLVDNEKKPAMGYIYE---AMDRAKEAIAKS--FEGKSAKYKDVFEIIDQRWECQLHQPLHAAGHYLNPEYFYQDPAIENCREVTNGLYACIQKLVPS---------IEVQD--------KIVSELPLYTRAE--GQFGLPMAKRSRATRSPAEWWNLYGNS-APHLQKLAIRILSLTASSAGCERNWSVFEHIHSKKRNRLEHKRLNDLVYVKYNRALRTR 546
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI000904AAD1 (uncharacterized protein LOC109230180 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904AAD1)

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-15
Identity = 69/240 (28.75%), Postives = 112/240 (46.67%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADGTKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRRE-YMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAK----SLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLMYR 258
            W ++   LK++ PLF+++RL D  K  A    Y     +D  KEA        G   + + + + +D R E  +H P++ A   L PEY+ +  A+ N R     L    ++L+ +         + V+D        K++ +   Y      G   L  AK    + +  EWWN  G + +P L ++A RILS+  ++AGCERNWS+   +   K  R+    + +LVYV+ N  L  R
Sbjct:  435 WNQVVYILKIIGPLFKVLRLVDNEKKPAMGYTYE---AMDRAKEAIAKS--FEGKSAKYKDVFEIIDQRWECQLHQPLHAAGHYLNPEYFYQDPAIENCREVTNGLYACIQKLVPS---------IEVQD--------KIVSELPLYTRAE--GQFGLPMAKRSRATRSPAEWWNLYGNS-APHLQKLAIRILSLTASSAGCERNWSVFEHIHSKKRNRLEHKRLNDLVYVKYNRALRTR 649
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI0019D64DD1 (uncharacterized protein LOC120653517 n=4 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D64DD1)

HSP 1 Score: 74.7 bits (182), Expect = 1.410e-11
Identity = 63/239 (26.36%), Postives = 110/239 (46.03%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADGTKPQATQLLY-RLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRREYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKE-----WWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W E+ L L V EPLF+++RLADG    +   +Y  L     ++KE F  +      K+ L +++  +  R   + SP++  A+ L P Y     ++ ++               +N    +        DEDK      + ++    K  N  GA   + A++    +     WW   G + +P L ++A RILS+  +A+GCERNWS    +   K  R+++  +  LVY++ N +L+
Sbjct:  443 WKEVKLILAVFEPLFKVLRLADGDVKASMGFIYGELLKAKREIKEVFGNNE--TRFKDVLAVIEKKMKGR---LDSPLHLTAYLLNPHYSFTNPSIFDEPK-------------MNEAFIACVEQFYYHDEDKQDQAANIELK----KFQNREGAFSKKLARTFENFDYNPASWWRLYG-SHTPALQKMATRILSLTSSASGCERNWSGFEGIHTKKRNRLTTARLEKLVYIQFNNRLL 658
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: A0A811QKX6_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QKX6_9POAL)

HSP 1 Score: 73.6 bits (179), Expect = 2.590e-11
Identity = 64/239 (26.78%), Postives = 108/239 (45.19%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMR-REYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDK----GGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W +++L LKV EPL +++RL DG  KP    +   L     ++KEAF        +++    +   +D + ++ + SP++ AA+ L P Y     A+ +D           E     HG D +       D +K     G   K M +       N P +             WW   G  G+P L ++A RILS+  +++GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:   95 WKDVSLCLKVFEPLVKVLRLVDGDVKPSMGYVYGELLKAKREIKEAF------GNVEKNYREVMAIVDKKMKDRLDSPLHVAAYMLNPYYSYSNLAIFSDSIVGEKFMLCVETFY--HGEDDKEYRAVNEDLEKFQKRHGSFSKKMARSCERFEFN-PAS-------------WWRLYG-GGAPDLQRMAIRILSLTSSSSGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 310
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: A0A811Q1H9_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811Q1H9_9POAL)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-10
Identity = 64/240 (26.67%), Postives = 109/240 (45.42%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRRE-YMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKE-----WWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W +++L LKV EPL +++RL DG  KP    +   L     ++KEAF        +++  + +   +D + +  + SP + AA+ L P Y     A+ +D   +       E     +G D +       D +K            + + VNF      + AKS    E     WW   G   +P L ++A RILS+  + +GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:   59 WRDVSLCLKVFEPLVKVLRLVDGDVKPSMGNVYGELLKAKREIKEAF------GNVEKNYKEVMAIVDKKTKGRLDSPTHVAAYMLNPYYSYSNVAIFSDPTVVEKFMQCVETFY--YGDDDKEYRTVNEDLEK-----------FQKRQVNFSK----KMAKSCERFEFNPASWWRLYG-GETPDLQRMAIRILSLTSSTSGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 274
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: A0A811QMP8_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QMP8_9POAL)

HSP 1 Score: 71.2 bits (173), Expect = 1.620e-10
Identity = 64/239 (26.78%), Postives = 107/239 (44.77%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMR-REYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDK----GGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W +++L LKV EPL +++RL DG  KP    +   L     ++KEAF        +K+    +   +D + ++ + SP++ AA+ L P Y     A+ +D           E     HG D +       D +K     G   K M +       N P +             WW   G  G+  L ++A RILS+  +++GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:  140 WKDVSLCLKVFEPLVKVLRLVDGDVKPSMGYVYGELLKAKREIKEAF------GNVKKNYREVMAIIDKKMKDRLDSPLHVAAYMLNPYYSYSNPAIFSDSIVGGKFMLCVETFY--HGEDDKEYRAVNEDLEKFQKRHGSFSKKMARSCERFEFN-PAS-------------WWRLYG-GGALDLQRMAIRILSLTSSSSGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 355
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI0019D69FA9 (uncharacterized protein LOC120648164 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D69FA9)

HSP 1 Score: 70.1 bits (170), Expect = 4.660e-10
Identity = 63/239 (26.36%), Postives = 108/239 (45.19%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAF----RTDPDLAGIKERLELLKDALDMRREYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAK-SLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W  ++L LKV EPL +++RL DG  KP    +   L     ++KE+F    +   D+  I ++   +K+ LD        P++ AA+ L P Y     A+ +D + +       E    +             D+DK      V ++  + +  NF   +     +       WW   G  G+P L  +A RILS+  +A+GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:  247 WRNVSLCLKVFEPLVKVLRLVDGDVKPSMGFVYGELLKAKKEIKESFGNVEKNYRDVMAIVDKK--MKNRLDC-------PLHVAAYLLNPYYSYSNPAIFSDSNVVEKFMQCVETFYHD-------------DDDKQHGAVNVDLEIFQKRQGNFSKKMAKTCERFDFNPVSWWRLYG-GGAPDLQYMAIRILSLTSSASGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 462
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: A0A811RTF0_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RTF0_9POAL)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-9
Identity = 65/238 (27.31%), Postives = 105/238 (44.12%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRREYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDK----GGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W +++L LKV EPL +++RL DG  KP    +   L     ++KEAF         KE + ++   +  R   + SP + AA+ L   Y     A+ +D   +       E     +G D +       D +K     G   K M +       N P +             WW   G  G+P L ++A RILS+  +A+GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:  770 WRDVSLCLKVFEPLVKVLRLFDGDVKPSMGYVYGELLKAKREIKEAFGNVEK--NYKEVMAIVDKKMKGR---LDSPTHVAAYMLNSYYSYSNVAIFSDPTVVEKFMQCVETFY--YGDDDKEYRTVNEDLEKFQKRQGNFSKKMAKSCERFEFN-PAS-------------WWRFYG-GGTPDLQRMAIRILSLTSSASGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 985
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI0008449719 (uncharacterized protein LOC123068209 isoform X2 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI0008449719)

HSP 1 Score: 66.6 bits (161), Expect = 6.850e-9
Identity = 60/238 (25.21%), Postives = 109/238 (45.80%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADGTKPQATQLLYRLHNVLDDLKEAF-----RTDPDLAGIKERLEL-LKDALDMRREYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAKS---LTGKEWWNTLGKAGSPKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRAN 252
            W  ++L +KV EPL +++RLADG      Q +  ++  + + K+A       +D D   I   +E  +   LD       +P++ AA+ L P Y     +M  +   +++L    E+  ++             D++K   V  + +   + K   F G +   +A S       EWW T G   +P L  +A RIL++  +++GCERNW +   V   +  ++  +   +LVY++ N
Sbjct:  265 WKNVSLCIKVFEPLVKILRLADGDG----QSMASMYGEIIEAKKAILVAVDNSDKDYKAITTAMESKMNGRLD-------TPLHIAAYALNPYYSYATTSMFTNVEVMSDLMEVIEQFYLD-------------DDEKQNKVLNIDLPKFKKKERMF-GKVVATKAISNANFNAGEWWATYGLQ-TPTLMHIALRILNLTTSSSGCERNWCVFEQVDAKRRNKLDVHHRDDLVYIQFN 476
[Close]
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Match: UPI0019D5748C (uncharacterized protein LOC120690646 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5748C)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-8
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 0 
Query:   24 WFEITLFLKVVEPLFQLVRLADG-TKPQATQLLYRLHNVLDDLKEAF----RTDPDLAGIKERLELLKDALDMRREYMHSPVYGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAI---LAVRDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKEWWNTLGKAGSPKLAQVAGRILSM--VPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVRANLQLM 256
            W  ++L LKV EPL +++RL DG  KP    +   L     ++KE+F    +   D+  I ++   +K+ LD        P++ AA+ L P Y     A+ +D + +       E    ++      A+   L +  + +G    K+     R+                     WW   G  G+P L  +A RILS+    +A+GCERNWS        +  R+++  + +LV+++ N +LM
Sbjct:  446 WRNVSLCLKVFEPLVKVLRLVDGDVKPSMGYVYGELLKAKKEIKESFGNVEKNYRDVMAIVDKK--MKNRLDC-------PLHVAAYLLNPYYSYNNPAIFSDSNVVEKFMQCVETFYHDNDDKQHGAVNVDLEIFQKRQGNFSKKMAKTCERF---------------DFNPASWWRLYG-GGAPDLQYMAIRILSLSLTSSASGCERNWSTFEQHHTKRRNRLTTERLNSLVFIQFNNKLM 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95830.16981.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI00090496541.110e-1528.75uncharacterized protein LOC109222647 n=1 Tax=Nicot... [more]
UPI000904AAD11.700e-1528.75uncharacterized protein LOC109230180 n=2 Tax=Nicot... [more]
UPI0019D64DD11.410e-1126.36uncharacterized protein LOC120653517 n=4 Tax=Panic... [more]
A0A811QKX6_9POAL2.590e-1126.78Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A811Q1H9_9POAL1.430e-1026.67Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A811QMP8_9POAL1.620e-1026.78Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI0019D69FA94.660e-1026.36uncharacterized protein LOC120648164 n=1 Tax=Panic... [more]
A0A811RTF0_9POAL1.840e-927.31Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI00084497196.850e-925.21uncharacterized protein LOC123068209 isoform X2 n=... [more]
UPI0019D5748C1.370e-825.51uncharacterized protein LOC120690646 n=2 Tax=Panic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32166:SF66coord: 24..254
NoneNo IPR availablePANTHERPTHR32166FAMILY NOT NAMEDcoord: 24..254
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 24..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95830contigH-elongata_contig95830:361..1134 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95830.16981.1mRNA_H-elongata_contig95830.16981.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95830 361..1134 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95830.16981.1 ID=prot_H-elongata_contig95830.16981.1|Name=mRNA_H-elongata_contig95830.16981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
ALRATGDEFKRFILDTDNSEGGAWFEITLFLKVVEPLFQLVRLADGTKPQ
ATQLLYRLHNVLDDLKEAFRTDPDLAGIKERLELLKDALDMRREYMHSPV
YGAAFCLAPEYYRKYAAMINDRHPLTNLRTRAERLLINHGSDSRAAILAV
RDEDKGGPVGKVMVQYARYKSVNFPGAIFLEQAKSLTGKEWWNTLGKAGS
PKLAQVAGRILSMVPAAAGCERNWSLMRSVSEGKHVRMSSNTMFNLVYVR
ANLQLMYR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf