prot_H-elongata_contig958.16980.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig958.16980.1
Unique Nameprot_H-elongata_contig958.16980.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length256
Homology
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BLAST of mRNA_H-elongata_contig958.16980.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 9.630e-82
Identity = 142/230 (61.74%), Postives = 180/230 (78.26%), Query Frame = 0 
Query:   25 ASGMVQLDRPKEVQGVFDKLQKKAVEDYK-SSPAVVPSQDEASGDVTMNVLPEAALSLEKQLESILKDSKFMPRKLKKEKRVEFVNALKAMENVYPPDANPLEDPALSGQWSVVYSSSSRVIRRALRGILAALFKASDPRQMVDTGASSVVNACRARLRMTPLALRLAQKGSFRSVEERKISLDFP-RRKGFWRNMLPCLMSGNMQAEVTYLSSRWRICRSGDVTVAFRK 252
            +SG V+LDRPKEVQGVFD +QKKAV+ YK SS A+  SQD   G V    + EAA +LE +LES+L +S F PRKLKK+K+ + V+A+KAME  YP  ANPL DPALSGQWSVVYSSSSR++ R ++G+ +  FK SD RQ+VDTGASSV+NACRARLR+TPLALR+A+KGS+R   ERK+ ++ P  +KG  R +LP L +G ++AEVTYLS +WRICR+G VT+AFRK
Sbjct:  223 SSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAEGGAVAP--MSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRK 450
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BLAST of mRNA_H-elongata_contig958.16980.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.400e-34
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 0 
Query:   25 ASGMVQLDRPKEVQGVFDKLQKKAVEDYKSSPAVVPSQDEASGDVTMNVLPEAALSLEKQLESILKDSKFMPRKLKKEKRVEFVNALKAMENVYPPDANPLEDPALSGQWSVVYSSSSRVIRR 147
            +SG V+LDRPKEVQGVFD +QKKAVE YK+S   +    +A G      + EAA +LE +LES+L +S F PRKLKK+K+ + V A+KAME  YP DANPL DPALSGQWSVVYSSSSR + R
Sbjct:  194 SSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAEGGAAAP-MSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSRGLGR 315
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BLAST of mRNA_H-elongata_contig958.16980.1 vs. uniprot
Match: D8LNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0 
Query:  209 PRRKGFWRNMLPCLMSGNMQAEVTYLSSRWRICRSGDVTVAFRK 252
            P +KG  R +LP L +G ++AEVTYLS +WR+CR+G VTVAFRK
Sbjct:    3 PTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRVCRAGGVTVAFRK 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig958.16980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE9.630e-8261.74PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LNG8_ECTSI4.400e-3460.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNG7_ECTSI7.420e-1061.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 100..210
e-value: 5.8E-7
score: 29.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig958contigH-elongata_contig958:2234..4062 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig958.16980.1mRNA_H-elongata_contig958.16980.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig958 572..5570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig958.16980.1 ID=prot_H-elongata_contig958.16980.1|Name=mRNA_H-elongata_contig958.16980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MANVKNAAIGAVTPVPTMTSKTGSASGMVQLDRPKEVQGVFDKLQKKAVE
DYKSSPAVVPSQDEASGDVTMNVLPEAALSLEKQLESILKDSKFMPRKLK
KEKRVEFVNALKAMENVYPPDANPLEDPALSGQWSVVYSSSSRVIRRALR
GILAALFKASDPRQMVDTGASSVVNACRARLRMTPLALRLAQKGSFRSVE
ERKISLDFPRRKGFWRNMLPCLMSGNMQAEVTYLSSRWRICRSGDVTVAF
RKIEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom