mRNA_H-elongata_contig9574.16974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9574.16974.1
Unique NamemRNA_H-elongata_contig9574.16974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9574.16974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9574contigH-elongata_contig9574:5737..8076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001630.1
Hectar predicted targeting categoryother localisation
Exons7
Model size845
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9574.16974.1prot_H-elongata_contig9574.16974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9574 6736..8076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.4842317-UTR-H-elongata_contig9574:5736..59081622931351.4842317-UTR-H-elongata_contig9574:5736..5908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 5737..5908 +
1691679801.3065188-UTR-H-elongata_contig9574:5736..59081691679801.3065188-UTR-H-elongata_contig9574:5736..5908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 5737..5908 +
1622931351.5074356-UTR-H-elongata_contig9574:6175..62341622931351.5074356-UTR-H-elongata_contig9574:6175..6234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6176..6234 +
1691679801.3154256-UTR-H-elongata_contig9574:6175..62341691679801.3154256-UTR-H-elongata_contig9574:6175..6234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6176..6234 +
1622931351.5263214-UTR-H-elongata_contig9574:6321..63531622931351.5263214-UTR-H-elongata_contig9574:6321..6353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6322..6353 +
1691679801.323155-UTR-H-elongata_contig9574:6321..63531691679801.323155-UTR-H-elongata_contig9574:6321..6353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6322..6353 +
1622931351.5439556-UTR-H-elongata_contig9574:6637..67351622931351.5439556-UTR-H-elongata_contig9574:6637..6735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6638..6735 +
1691679801.3309443-UTR-H-elongata_contig9574:6637..67351691679801.3309443-UTR-H-elongata_contig9574:6637..6735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9574 6638..6735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.5606413-CDS-H-elongata_contig9574:6735..68291622931351.5606413-CDS-H-elongata_contig9574:6735..6829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 6736..6829 +
1691679801.3412368-CDS-H-elongata_contig9574:6735..68291691679801.3412368-CDS-H-elongata_contig9574:6735..6829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 6736..6829 +
1622931351.5741358-CDS-H-elongata_contig9574:7101..72621622931351.5741358-CDS-H-elongata_contig9574:7101..7262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7102..7262 +
1691679801.3500593-CDS-H-elongata_contig9574:7101..72621691679801.3500593-CDS-H-elongata_contig9574:7101..7262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7102..7262 +
1622931351.5850713-CDS-H-elongata_contig9574:7498..76331622931351.5850713-CDS-H-elongata_contig9574:7498..7633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7499..7633 +
1691679801.358449-CDS-H-elongata_contig9574:7498..76331691679801.358449-CDS-H-elongata_contig9574:7498..7633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7499..7633 +
1622931351.595888-CDS-H-elongata_contig9574:7983..80761622931351.595888-CDS-H-elongata_contig9574:7983..8076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7984..8076 +
1691679801.3663821-CDS-H-elongata_contig9574:7983..80761691679801.3663821-CDS-H-elongata_contig9574:7983..8076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 7984..8076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9574.16974.1

>prot_H-elongata_contig9574.16974.1 ID=prot_H-elongata_contig9574.16974.1|Name=mRNA_H-elongata_contig9574.16974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MVTHQPLALTNARGRLGGAHRPGQCRPCLLRQSSKEERLSREEVVEQTAE
ESAAENDEVEDDAELLRHESSLSEINSGDEDGDAQVGMDASEERAKESTE
VASATEGLGRSTSKVPGRHGATTRQGQQLEGCKEHASEHESEELEEAIGS
NGECAEDEELT
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mRNA from alignment at H-elongata_contig9574:5737..8076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9574.16974.1 ID=mRNA_H-elongata_contig9574.16974.1|Name=mRNA_H-elongata_contig9574.16974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2340bp|location=Sequence derived from alignment at H-elongata_contig9574:5737..8076+ (Himanthalia elongata Himel1 dioecious)
GGAGGAGGTAGCGGTTATGCCAAGAACTTCAAGGAACGGATACCGACGAC
GGCTTGGAACCCGGAGTCGTGGGATGCGGACGAAACCTGGCGCATGGAAG
ACGGCGAGGACCACGACGGATACGTCGAAGAGACCCCGCAAAAAAAGAGG
GCAGCAGCACGGGTGAAACCAGGTGCGCGGCGGCGTGCGTTCAACCGCAA
GCGTGTCACGCTATTCATCCCTTGAAGCATTTTTTGTCTGTCGTTTGTCT
CAAGTAGGTGTGTTGGAACAAAATTGGAACTGGTCCCTGAACGTTGAGCC
TTACTTGCTTCTTCTGCCTACAATTCCCTACAGATGCCAAAACCGAACGA
CATGCAACACGTCTTCGCGTCCATCCATGATACTGTCGTGATGCGGCGGT
CCACGTTTTTCTCTTTTACGTACCATTTGCAATATCTAGAGACACTCTCT
AGAAAGAAGCGTGGCGGGGTTGGAGTCACCAGAGGGACACCTGTCGCCAA
GGGCTCTACCGGAACGTCCTCAGCGAGAGCCGCTTCCAAACCATCGCTCT
TCTGTCGTGGAGGGACCAAGCGCTCAACCTGCGCTTCACAACCCGAGGAG
GCTGTAGGAGACTCCAGGCAAGCATGCTCGATGCAGAAGGCGAAGAGGGG
GGAAAGTCGACATATCAAGAGTGATTCGACGGTGAAGGCGGGGAAGGATC
CTTCCCCGGTGAAAATTTCAACTCCCGGGGATGTAGTTGGTTCATCCCCT
TATGTTGTGAGTGAATTGTGTTCGAGGTACGATAGTGCGTCGGCTAAGGG
GATGTATAGCCTCATCCCCGGGAGGGATTTTTTAATGACTCCCCCCCCCA
CCCCCCCCCTCCCCCAACCTTCCCCTCTCCAAATGTTTCAATCACTGTCA
GTCGGGTTGCCTCGAAGGTAAAAACAAAGAAGACTGCTAAAACATCACAG
AAAGAGATCGAGACGGCCTTCTCTGCTGCCGACACAGCTGGGAAGAGAGA
TGGTGACTCATCAACCGCTGGCCCTAACAAATGCGAGAGGCCGCCTAGGA
GGGGCGCATCGTCCAGGACAATGCAGGCCTTGCCTACTACGACAGAGTCG
CCATCTTCCTCTGATGAGGCCGGTGTGTTAAGCCTGCGCGACGACCGGTC
CGTTTATTCGGGATAGCTTTATTGAAACCCTTTATATCGTGGGTATGATA
AGAGTTCGACCTCTACGGTTGCGATGTAGCTGTGATCCTCCGCACGATTC
GTGCCATAACCCGGCAAAGTTGTACACCGTCGTGTGTTTTCCCCTCCTGT
CTCTGTCACGTGCAAAGAGCTCTCGGAGGAAGATGGATCCGGCGATGAAG
CCGCGAGTGAGTGGGAATCCTCCAAGGAAGAGAGACTATCCAGGGAGGAA
GTCGTGGAGCAGACAGCGGAAGAGTCCGCCGCAGAGAACGACGAGGTTGA
GGACGATGCCGAACTCTTGAGGCACGAGTCTTCCCTCTCCGAGATTAATT
CGGGAGACGAGGACGGGGACGCTCAGGTAGAGACGGTGGCGTCTTCGTGC
TGTTGATAAGGGCTGGATAGTTACGGTATATCACGCTGTATCGTCGGGGT
TAATGGAAGAATAGATTTGTCGTTGCCACGCCCCCCTATCAGCGCCGTTT
CATTGTCCACATTGTTGCGTGGATCAATGTAGCGTCTAACAGAACATATC
TCAGTGTGTAGACGAACGCCGTGGAGGATTAATTGGTGGAAGGATTCCGA
TCTTTTGCATAGGTCGGCATGGACGCTTCGGAGGAGAGAGCGAAGGAAAG
CACAGAGGTGGCGTCGGCCACCGAAGGACTCGGCCGTTCGACTTCGAAGG
TTCCCGGGCGGCACGGTGCTACCACTCGCCAAGGGCAACAACTCGAGGCA
CGCATAATCGGAACTGATTAACGGATGCAAGTCTTGTAGTTGCACTCGAG
GAGATTTCACGATGGATGGTTTGCACAAGTACTATTGGCGCGCAAACCCC
GATTTTTTTTATTATTGTTGTTGTTTTTTAGGTCCTTTAGCTCTTCGGTA
TTTTCTTGCATGCGCGCGAAGCTCCGCCTCAGTAGGGGATGCCTTAAGTC
TCGTTGATCAAGATAGATCCGCAAAGGCGTCCCCAAGGATGACCACGGGG
TCCCAGGGGTTGCGACGCACTGGCGACTCCAAGTGCGCCTCCTCGCCATC
AGTAACGAACGCCTCGGCATCGTCTCCTCTTTCTATGTACGAATTAGGGG
TGCAAAGAGCACGCGAGCGAACATGAGAGCGAGGAATTGGAGGAGGCCAT
CGGTTCAAATGGCGAATGCGCGGAGGACGAGGAGCTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig9574:5737..8076+

>mRNA_H-elongata_contig9574.16974.1 ID=mRNA_H-elongata_contig9574.16974.1|Name=mRNA_H-elongata_contig9574.16974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig9574:5737..8076+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACTCATCAACCGCTGGCCCTAACAAATGCGAGAGGCCGCCTAGG
AGGGGCGCATCGTCCAGGACAATGCAGGCCTTGCCTACTACGACATGGTG
ACTCATCAACCGCTGGCCCTAACAAATGCGAGAGGCCGCCTAGGAGGGGC
GCATCGTCCAGGACAATGCAGGCCTTGCCTACTACGACAATCCTCCAAGG
AAGAGAGACTATCCAGGGAGGAAGTCGTGGAGCAGACAGCGGAAGAGTCC
GCCGCAGAGAACGACGAGGTTGAGGACGATGCCGAACTCTTGAGGCACGA
GTCTTCCCTCTCCGAGATTAATTCGGGAGACGAGGACGGGGACGCTCAGA
ATCCTCCAAGGAAGAGAGACTATCCAGGGAGGAAGTCGTGGAGCAGACAG
CGGAAGAGTCCGCCGCAGAGAACGACGAGGTTGAGGACGATGCCGAACTC
TTGAGGCACGAGTCTTCCCTCTCCGAGATTAATTCGGGAGACGAGGACGG
GGACGCTCAGGTCGGCATGGACGCTTCGGAGGAGAGAGCGAAGGAAAGCA
CAGAGGTGGCGTCGGCCACCGAAGGACTCGGCCGTTCGACTTCGAAGGTT
CCCGGGCGGCACGGTGCTACCACTCGCCAAGGGCAACAACTCGAGGTCGG
CATGGACGCTTCGGAGGAGAGAGCGAAGGAAAGCACAGAGGTGGCGTCGG
CCACCGAAGGACTCGGCCGTTCGACTTCGAAGGTTCCCGGGCGGCACGGT
GCTACCACTCGCCAAGGGCAACAACTCGAGGGGTGCAAAGAGCACGCGAG
CGAACATGAGAGCGAGGAATTGGAGGAGGCCATCGGTTCAAATGGCGAAT
GCGCGGAGGACGAGGAGCTGACGGGGTGCAAAGAGCACGCGAGCGAACAT
GAGAGCGAGGAATTGGAGGAGGCCATCGGTTCAAATGGCGAATGCGCGGA
GGACGAGGAGCTGACG
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