mRNA_H-elongata_contig9574.16973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9574.16973.1
Unique NamemRNA_H-elongata_contig9574.16973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9574.16973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9574contigH-elongata_contig9574:4096..5405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001630.1
Exons4
Model size364
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9574.16973.1prot_H-elongata_contig9574.16973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9574 4096..5404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.3758988-CDS-H-elongata_contig9574:4095..41881622931351.3758988-CDS-H-elongata_contig9574:4095..4188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 4096..4188 +
1691679801.2724407-CDS-H-elongata_contig9574:4095..41881691679801.2724407-CDS-H-elongata_contig9574:4095..4188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 4096..4188 +
1622931351.394375-CDS-H-elongata_contig9574:4584..47191622931351.394375-CDS-H-elongata_contig9574:4584..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 4585..4719 +
1691679801.280374-CDS-H-elongata_contig9574:4584..47191691679801.280374-CDS-H-elongata_contig9574:4584..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 4585..4719 +
1622931351.4159026-CDS-H-elongata_contig9574:5048..51411622931351.4159026-CDS-H-elongata_contig9574:5048..5141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 5049..5141 +
1691679801.2891953-CDS-H-elongata_contig9574:5048..51411691679801.2891953-CDS-H-elongata_contig9574:5048..5141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 5049..5141 +
1622931351.432896-CDS-H-elongata_contig9574:5362..54041622931351.432896-CDS-H-elongata_contig9574:5362..5404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 5363..5404 +
1691679801.2977922-CDS-H-elongata_contig9574:5362..54041691679801.2977922-CDS-H-elongata_contig9574:5362..5404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9574 5363..5404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9574.16973.1

>prot_H-elongata_contig9574.16973.1 ID=prot_H-elongata_contig9574.16973.1|Name=mRNA_H-elongata_contig9574.16973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
KTPPVSGSASRDKKKGDAGLVLTSQSGGSRQVGFKRNLPPVKAPAVTPSL
GANDETLPPSSNGITVVQKIKPCPGQKGPSKRKITGSDIEAPPTVIAMVR
GDGLTIKKTRKDIRSFAEGSA
back to top

mRNA from alignment at H-elongata_contig9574:4096..5405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9574.16973.1 ID=mRNA_H-elongata_contig9574.16973.1|Name=mRNA_H-elongata_contig9574.16973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1310bp|location=Sequence derived from alignment at H-elongata_contig9574:4096..5405+ (Himanthalia elongata Himel1 dioecious)
AAAACACCCCCGGTTTCAGGCTCGGCTTCGCGGGATAAAAAAAAGGGTGA
CGCGGGTCTGGTTCTCACCTCCCAATCTGGGGGCTCTCGGCAGGCGAGGT
TTTGCTCTCTTTTTGTTGCTGAAGTTGTTGCTGCTTGTAAGTATTTAGTG
TTGTTGTGTGATATCCTCTTGGCATTTTCTACCTTGAGAGGTTCAAAAGA
GGGCGAAAGCTAGCTCTGTGTGAGCAATGATGTCATTTATGTTTCCTCTA
TTGATAAGTGTCACGAAGGTTATATACCCCAGGGGGGCCAAGGAAGTGTT
GCGCGACATCCTCACCAATCAATTATTTAGAGTTAGTTCCGTCGAATGGC
ACGGCGCTCGCTCGCCCCAGCATCGCAAGAAGTATTCCATGGGGAACATA
GAGGAAAAGGAGGTCGCATCGTTATCTGCTGAAGCTGAATGATACACAGA
AGATTCGCTATCGGGGGCGCGTGGCACTGTCGGTGGCAGGTGGGCTTCAA
GAGGAACCTACCACCCGTCAAGGCACCAGCGGTCACTCCTTCCCTGGGGG
CGAACGATGAGACCCTGCCGCCGAGCTCGAATGGGATCACCGTAGTACAG
AAGATTAAGCCGTGTCCGGGGCAGGTAGGATAATTTTCCCGTGAGAACCA
CAGAGGAATCTGCAGCTCTCGCACACAGTTAGAATGGCGTTGAGAGCATC
CACCCGGAAACGTTGAGAGCATCCACCCTTGCACGGACGGAGATGTTATT
TTTAAAGCCGCGGGAGTGATCCGGCAAGCCCTAGACGGTTGTACTACTCT
TGAGAGACGGACAGGGACAGGGACAGGGACAAATGCAGTGTGGTTTGATA
AGTATAAAAGGTTGGGGGGATGGGGGCGGGCTACGATAATTTTTTGTCTT
GTGTGACGATACGATTCGCTCGCGCGCCTGTCCTATCTATCTATACGGAA
CAGAAGGGTCCCTCGAAGAGAAAGATCACTGGATCTGACATTGAAGCACC
GCCGACGGTGATTGCGATGGTGAGGGGCGACGGTCTTACAATCAAGGTGA
GAAGTGATCGGCGCTGCTTCGACCGCAATGTTTCACCACGTCTGGTTCAA
AGCTTCCCGCTGAGTGACGCACACGCTTTAAACGCGGGGCGACTTACTAG
AGAGCCCCCCCCCCCCCACGCACCGTCTTTCATCTCAGGAGCTACAGATC
CGCGGCGATTTTTTTCACGATACCCACGCGCTATGCCCCCACTTTTGTAC
GCCTTTCCCGGTAGTAGAAGACACGCAAAGACATCAGGAGCTTTGCCGAG
GGCAGCGCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9574:4096..5405+

>mRNA_H-elongata_contig9574.16973.1 ID=mRNA_H-elongata_contig9574.16973.1|Name=mRNA_H-elongata_contig9574.16973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig9574:4096..5405+ (Himanthalia elongata Himel1 dioecious)
AAAACACCCCCGGTTTCAGGCTCGGCTTCGCGGGATAAAAAAAAGGGTGA
CGCGGGTCTGGTTCTCACCTCCCAATCTGGGGGCTCTCGGCAGAAAACAC
CCCCGGTTTCAGGCTCGGCTTCGCGGGATAAAAAAAAGGGTGACGCGGGT
CTGGTTCTCACCTCCCAATCTGGGGGCTCTCGGCAGGTGGGCTTCAAGAG
GAACCTACCACCCGTCAAGGCACCAGCGGTCACTCCTTCCCTGGGGGCGA
ACGATGAGACCCTGCCGCCGAGCTCGAATGGGATCACCGTAGTACAGAAG
ATTAAGCCGTGTCCGGGGCAGGTGGGCTTCAAGAGGAACCTACCACCCGT
CAAGGCACCAGCGGTCACTCCTTCCCTGGGGGCGAACGATGAGACCCTGC
CGCCGAGCTCGAATGGGATCACCGTAGTACAGAAGATTAAGCCGTGTCCG
GGGCAGAAGGGTCCCTCGAAGAGAAAGATCACTGGATCTGACATTGAAGC
ACCGCCGACGGTGATTGCGATGGTGAGGGGCGACGGTCTTACAATCAAGA
AGGGTCCCTCGAAGAGAAAGATCACTGGATCTGACATTGAAGCACCGCCG
ACGGTGATTGCGATGGTGAGGGGCGACGGTCTTACAATCAAGAAGACACG
CAAAGACATCAGGAGCTTTGCCGAGGGCAGCGCGAAGACACGCAAAGACA
TCAGGAGCTTTGCCGAGGGCAGCGCG
back to top