mRNA_H-elongata_contig95723.16972.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 195 bits (495), Expect = 5.490e-56 Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1
Query: 1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSPDQ 327
++PF+FFS+G TF EMM TATGTSSYP LPP RVKHLITELY+ATKKVVVGNMV++V+RAPLPILHHNIDIWTDKGSG+KFLGLHVFYV ANFELKDALLSIKRY+PDQ
Sbjct: 193 MLPFSFFSSGGTFKEMMATATGTSSYPTLPPRRVKHLITELYVATKKVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQ 301
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE) HSP 1 Score: 147 bits (370), Expect = 6.380e-41 Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALL--SIKRYSPDQ 327
L+P +FFS+GD ++ G S +P L P RVKHL+TELY+ATKKVVVGNM+E+V++APLP+LHH IDIWT+KGSG+KFLG+H++YV A+FE+K ALL +KRYSPDQ
Sbjct: 48 LLPVSFFSSGDEL-RTLLALIGDSDFPPLRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQ 157
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 145 bits (367), Expect = 8.680e-40 Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIK 309
++PF F+S+G+ F EMM T G +SYPELPP RVKHL+ ELY +TKK V+G+M+ +V+ APLPILHH IDIWTDK SG+KFLG+H+FYV ANFELK AL+S K
Sbjct: 119 MLPFHFYSSGEMFREMMATHGGNTSYPELPPKRVKHLLVELYCSTKKAVLGDMLVEVRSAPLPILHHMIDIWTDKPSGRKFLGVHLFYVTANFELKQALISAK 221
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.280e-24 Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 37 FPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFL 246
F EMM TA G + YPELP RVK L+ E+YIATKK V+ NM+E+VK APLPILHH IDIWTDKGSG+K L
Sbjct: 2 FKEMMATAAGNTPYPELPAERVKDLLVEMYIATKKAVMSNMLEEVKNAPLPILHHMIDIWTDKGSGRKTL 71
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.080e-20 Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1
Query: 157 MVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSPDQ 327
MVE+V+ APLPILHH IDIW DK SG+KFLG+HVFYV ANFELK LLSIKRY P Q
Sbjct: 1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQ 57
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.000e-20 Identity = 40/82 (48.78%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 4 VPFTFFSTGDTFPEMMVTATGTSS-YPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFL 246
+PF+FFS G+++ ++M T + YP LP R++HL+ E+++ATKK V+GNM+E++K+APLPI+H+ +D+WT K SG KF+
Sbjct: 7 LPFSFFS-GNSWKDVMGLETADDTPYPALPSRRIEHLLVEMFVATKKAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.390e-19 Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 103 KHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSP 321
KHL+ E+Y+ATKK VVGNM+ +++RAPLPI+H+ ID+W K +G K++ +HV YV +N EL+ LL++K Y+P
Sbjct: 210 KHLLVEMYVATKKAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAP 282
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.980e-19 Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 76 YPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVF 261
YP LP R+K+L+ E+++ATK V+GNM E++K+APLPI+H+ +D+WT K SG KF+ +H F
Sbjct: 11 YPALPSSRIKYLLVEMFVATKTAVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVHAF 72
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.470e-17 Identity = 35/59 (59.32%), Postives = 50/59 (84.75%), Query Frame = 1
Query: 145 VVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSP 321
VVGNM E++ +APLPI+H+ +D+WT K SG+K+LG+HVFYV +NF L+ AL+S+K Y+P
Sbjct: 205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAP 263
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.010e-16 Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1
Query: 157 MVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLS 303
MVE+V+ APLPILHH IDIW DK SG+KFLG+HVFYV ANFELK LLS
Sbjct: 1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS 49 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig95723.16972.1 >prot_H-elongata_contig95723.16972.1 ID=prot_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVback to top mRNA from alignment at H-elongata_contig95723:230..1180+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig95723.16972.1 ID=mRNA_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=951bp|location=Sequence derived from alignment at H-elongata_contig95723:230..1180+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig95723:230..1180+ >mRNA_H-elongata_contig95723.16972.1 ID=mRNA_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig95723:230..1180+ (Himanthalia elongata Himel1 dioecious)back to top |