mRNA_H-elongata_contig95723.16972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95723.16972.1
Unique NamemRNA_H-elongata_contig95723.16972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 5.490e-56
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1
Query:    1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSPDQ 327
            ++PF+FFS+G TF EMM TATGTSSYP LPP RVKHLITELY+ATKKVVVGNMV++V+RAPLPILHHNIDIWTDKGSG+KFLGLHVFYV ANFELKDALLSIKRY+PDQ
Sbjct:  193 MLPFSFFSSGGTFKEMMATATGTSSYPTLPPRRVKHLITELYVATKKVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQ 301          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.380e-41
Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALL--SIKRYSPDQ 327
            L+P +FFS+GD     ++   G S +P L P RVKHL+TELY+ATKKVVVGNM+E+V++APLP+LHH IDIWT+KGSG+KFLG+H++YV A+FE+K ALL   +KRYSPDQ
Sbjct:   48 LLPVSFFSSGDEL-RTLLALIGDSDFPPLRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQ 157          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.680e-40
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIK 309
            ++PF F+S+G+ F EMM T  G +SYPELPP RVKHL+ ELY +TKK V+G+M+ +V+ APLPILHH IDIWTDK SG+KFLG+H+FYV ANFELK AL+S K
Sbjct:  119 MLPFHFYSSGEMFREMMATHGGNTSYPELPPKRVKHLLVELYCSTKKAVLGDMLVEVRSAPLPILHHMIDIWTDKPSGRKFLGVHLFYVTANFELKQALISAK 221          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.280e-24
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   37 FPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFL 246
            F EMM TA G + YPELP  RVK L+ E+YIATKK V+ NM+E+VK APLPILHH IDIWTDKGSG+K L
Sbjct:    2 FKEMMATAAGNTPYPELPAERVKDLLVEMYIATKKAVMSNMLEEVKNAPLPILHHMIDIWTDKGSGRKTL 71          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-20
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  157 MVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSPDQ 327
            MVE+V+ APLPILHH IDIW DK SG+KFLG+HVFYV ANFELK  LLSIKRY P Q
Sbjct:    1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQ 57          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.000e-20
Identity = 40/82 (48.78%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 VPFTFFSTGDTFPEMMVTATGTSS-YPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFL 246
            +PF+FFS G+++ ++M   T   + YP LP  R++HL+ E+++ATKK V+GNM+E++K+APLPI+H+ +D+WT K SG KF+
Sbjct:    7 LPFSFFS-GNSWKDVMGLETADDTPYPALPSRRIEHLLVEMFVATKKAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.390e-19
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  103 KHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSP 321
            KHL+ E+Y+ATKK VVGNM+ +++RAPLPI+H+ ID+W  K +G K++ +HV YV +N EL+  LL++K Y+P
Sbjct:  210 KHLLVEMYVATKKAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAP 282          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.980e-19
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   76 YPELPPHRVKHLITELYIATKKVVVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVF 261
            YP LP  R+K+L+ E+++ATK  V+GNM E++K+APLPI+H+ +D+WT K SG KF+ +H F
Sbjct:   11 YPALPSSRIKYLLVEMFVATKTAVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVHAF 72          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.470e-17
Identity = 35/59 (59.32%), Postives = 50/59 (84.75%), Query Frame = 1
Query:  145 VVGNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLSIKRYSP 321
            VVGNM E++ +APLPI+H+ +D+WT K SG+K+LG+HVFYV +NF L+ AL+S+K Y+P
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAP 263          
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.010e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  157 MVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALLS 303
            MVE+V+ APLPILHH IDIW DK SG+KFLG+HVFYV ANFELK  LLS
Sbjct:    1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS 49          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95723.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE5.490e-5685.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ81_9PHAE6.380e-4163.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KS21_9PHAE8.680e-4066.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8D8_9PHAE1.280e-2470.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE2.080e-2077.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT2_9PHAE5.000e-2048.78Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5L1G0_9PHAE1.390e-1953.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM2_9PHAE3.980e-1953.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE4.470e-1759.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE4.010e-1677.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95723contigH-elongata_contig95723:230..1180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog2880.D7G3L2
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size331
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95723.16972.1prot_H-elongata_contig95723.16972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95723 230..1178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.2956057-CDS-H-elongata_contig95723:229..3701622931351.2956057-CDS-H-elongata_contig95723:229..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 230..370 +
1691679801.2380848-CDS-H-elongata_contig95723:229..3701691679801.2380848-CDS-H-elongata_contig95723:229..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 230..370 +
1622931351.3139272-CDS-H-elongata_contig95723:659..8211622931351.3139272-CDS-H-elongata_contig95723:659..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 660..821 +
1691679801.2498336-CDS-H-elongata_contig95723:659..8211691679801.2498336-CDS-H-elongata_contig95723:659..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 660..821 +
1622931351.3280976-CDS-H-elongata_contig95723:1154..11781622931351.3280976-CDS-H-elongata_contig95723:1154..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 1155..1178 +
1691679801.2640061-CDS-H-elongata_contig95723:1154..11781691679801.2640061-CDS-H-elongata_contig95723:1154..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95723 1155..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95723.16972.1

>prot_H-elongata_contig95723.16972.1 ID=prot_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
LVPFTFFSTGDTFPEMMVTATGTSSYPELPPHRVKHLITELYIATKKVVV
GNMVEKVKRAPLPILHHNIDIWTDKGSGQKFLGLHVFYVAANFELKDALL
SIKRYSPDQ
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mRNA from alignment at H-elongata_contig95723:230..1180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95723.16972.1 ID=mRNA_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=951bp|location=Sequence derived from alignment at H-elongata_contig95723:230..1180+ (Himanthalia elongata Himel1 dioecious)
CTGGTGCCGTTTACCTTCTTCTCAACCGGGGACACGTTCCCGGAGATGAT GGTGACAGCCACGGGAACCTCGTCGTACCCAGAGCTGCCTCCGCATCGTG TGAAGCACCTGATCACGGAGCTCTACATCGCCACGAAAAAGGTGAAACGC TAACGCTACTCGGCCGTGAAAGGTTAAGGCTCAAAGTTTAGATTTCTTTT AGTTTCGTGTTCATTGTTCTTTTTTGCACGTGTGTCTACTGAGTGGTGTG AAATTAATTTTTTATTTACAATTTTGCGTGTGATAACAGGCATATATTAC AGCTTGAATGCTGGTACCGATAAAATAAATAAATATATATATATATAACC TGATGATATTAACAACAAGCTCAATACTCAATACTTATACTTCGAATACT ATACTTTGCAACAACGCCATTTTACTGCAGGTGGTCGTGGGCAACATGGT GGAGAAGGTGAAAAGGGCGCCGCTTCCCATTTTGCACCACAACATCGACA TTTGGACTGACAAAGGATCGGGGCAGAAGTTCCTGGGGCTTCACGTTTTC TATGTGGCCGCAAACTTCGAGCTGAAGGATGCTCTTCTCTCTGTGAGTGA ATCGTTGTCCGGTGTCGGAAATAGATAGTGAATTTTTAGTATTCATCTTG TTTGCGTGTGATTATGATACGGTCTGTTGACCGCATGTCGTGTCTACTCT GGTTGGATTATCCTTGTGGAAAGAGGATGCATGTTGAGATATTGGATACG GCATACACCCCGAAATAAATTGGTCGATGAACCCCTTTTTGTTGAGTTTT GAAGGAGAGCAAAAACAAGTTGTGAGTTTTTACTTGTCTCGGAACTGATT GATTTATGTCGTATTCTCTGTTGAAACCCTTTTCCCCTGTCGTCTCCATG TCTGCCCTCATGAATATTACTCCAGATCAAGCGCTACTCTCCCGATCAGG G
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Coding sequence (CDS) from alignment at H-elongata_contig95723:230..1180+

>mRNA_H-elongata_contig95723.16972.1 ID=mRNA_H-elongata_contig95723.16972.1|Name=mRNA_H-elongata_contig95723.16972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig95723:230..1180+ (Himanthalia elongata Himel1 dioecious)
CTGGTGCCGTTTACCTTCTTCTCAACCGGGGACACGTTCCCGGAGATGAT
GGTGACAGCCACGGGAACCTCGTCGTACCCAGAGCTGCCTCCGCATCGTG
TGAAGCACCTGATCACGGAGCTCTACATCGCCACGAAAAAGCTGGTGCCG
TTTACCTTCTTCTCAACCGGGGACACGTTCCCGGAGATGATGGTGACAGC
CACGGGAACCTCGTCGTACCCAGAGCTGCCTCCGCATCGTGTGAAGCACC
TGATCACGGAGCTCTACATCGCCACGAAAAAGGTGGTCGTGGGCAACATG
GTGGAGAAGGTGAAAAGGGCGCCGCTTCCCATTTTGCACCACAACATCGA
CATTTGGACTGACAAAGGATCGGGGCAGAAGTTCCTGGGGCTTCACGTTT
TCTATGTGGCCGCAAACTTCGAGCTGAAGGATGCTCTTCTCTCTGTGGTC
GTGGGCAACATGGTGGAGAAGGTGAAAAGGGCGCCGCTTCCCATTTTGCA
CCACAACATCGACATTTGGACTGACAAAGGATCGGGGCAGAAGTTCCTGG
GGCTTCACGTTTTCTATGTGGCCGCAAACTTCGAGCTGAAGGATGCTCTT
CTCTCTATCAAGCGCTACTCTCCCGATCAGATCAAGCGCTACTCTCCCGA
TCAG
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