prot_H-elongata_contig95711.16971.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95711.16971.1
Unique Nameprot_H-elongata_contig95711.16971.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length239
Homology
BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.810e-46
Identity = 117/254 (46.06%), Postives = 149/254 (58.66%), Query Frame = 0
Query:    1 MMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFSYLQALGKR-DLPPPSPNAVDIIPDVFSRPSEGFP--EEDEDVSPDGGG-------VGGVPNHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDSTRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVN---FRRRQARRELQQPQGSVGGNGGVGVGDLSESMRRQERKEFWYM--VGRNHTFWCLKV 239
            MM+DY RARKEVLYGLD  GRPLE   +   +++   +  + PR PV    LQ+L KR +LP      +  + +  S  + G P   ++ +VS   GG       +GGVPNHVLVM+ERQKLGS+ATMARGAF+FSL GLC  LT+KR + +G WR S S  AARFV  GLW A+RPPPGLL  AL  T G +    FRRR + R  ++   S     G G G  S + R    +E   +  V R+  FWC KV
Sbjct:  474 MMKDYQRARKEVLYGLDDLGRPLEEVASSGREVDSGGRSPSLPRDPVSLEDLQSLSKRINLPRTGSINLSGLKNGLSTTAGGLPARSKEAEVSEGIGGRRREGDPLGGVPNHVLVMKERQKLGSAATMARGAFLFSLSGLCSALTKKRVNRTGGWRPSQSAEAARFVFSGLWTAIRPPPGLLG-ALSSTPGFLAARCFRRRDSSRGHRRKAKSALKRLGAGSGPGSPTPRPGGVREGGCLSAVTRSGYFWCFKV 726          
BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 8.120e-46
Identity = 114/263 (43.35%), Postives = 149/263 (56.65%), Query Frame = 0
Query:    1 MMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFSYLQALGKRD-LPPPSPNAVDIIPDVFSRPSEGFPEEDED--VSPDGGG-------VGGVPNHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDSTRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVNFRRRQARRELQQPQGSVGGNG------------GVGVGDLSESMRRQERKEFWYM--VGRNHTFWCLKV 239
            MM+DY RARKEVLYGLD  GRPLE   +   +++   +  + PR+PV    LQ+L KR+ LP      + ++ +  S  + G P   ++  VS +  G       +GGVPNHVLVM+ERQKLGSSATMARGAF+FSL GLC  LT+KR S +G WR S S  AARF++ GLW A+RPPPGLL  AL  T G++  R         +P+GS    G            G   G +S + R    +E   +  V R+   WC KV
Sbjct:  169 MMKDYQRARKEVLYGLDDLGRPLEEVASLGREVDRGGRSPSIPREPVSLEDLQSLSKREKLPRTGSINISVLKNGLSTTAGGVPASSKEAQVSDEIAGRRKERDPLGGVPNHVLVMKERQKLGSSATMARGAFLFSLSGLCSALTKKRVSRAGGWRPSQSAEAARFIISGLWTAIRPPPGLLG-ALSSTAGLLAPR-------CCRPRGSSSSRGHRRKVKLALKRLGARSGPVSPTSRTGGVREGGCLSAVTRSGYLWCFKV 423          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD61_ECTSI4.810e-4646.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ72_9PHAE8.120e-4643.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95711contigH-elongata_contig95711:257..1787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95711.16971.1mRNA_H-elongata_contig95711.16971.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95711 257..1808 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95711.16971.1 ID=prot_H-elongata_contig95711.16971.1|Name=mRNA_H-elongata_contig95711.16971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
MMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFS
YLQALGKRDLPPPSPNAVDIIPDVFSRPSEGFPEEDEDVSPDGGGVGGVP
NHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDS
TRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVNFRRRQARRELQQPQGS
VGGNGGVGVGDLSESMRRQERKEFWYMVGRNHTFWCLKV
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