mRNA_H-elongata_contig95669.16970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95669.16970.1
Unique NamemRNA_H-elongata_contig95669.16970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95669.16970.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.910e-32
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 GVGEMATDVADVDEFRLRLLEAVLGLYSNHPMNYGELEARFHALSFFLCALPYYESRELKGLALKTLEVIC 213
            G GEMA DV  +DEFRLRLLEAVLGLYSNHP+NY ELE +FHALSFFLCALPYYE+R+LKGLALKTLEVIC
Sbjct:  744 GAGEMAADVEHMDEFRLRLLEAVLGLYSNHPLNYHELETKFHALSFFLCALPYYENRDLKGLALKTLEVIC 814
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BLAST of mRNA_H-elongata_contig95669.16970.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.910e-32
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 GVGEMATDVADVDEFRLRLLEAVLGLYSNHPMNYGELEARFHALSFFLCALPYYESRELKGLALKTLEVIC 213
            G GEMA DV  +DEFRLRLLEAVLGLYSNHP+NY ELE +FHALSFFLCALPYYE+R+LKGLALKTLEVIC
Sbjct:  797 GAGEMAADVEHMDEFRLRLLEAVLGLYSNHPLNYHELETKFHALSFFLCALPYYENRDLKGLALKTLEVIC 867
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95669.16970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI42_ECTSI2.910e-3284.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH9_9PHAE2.910e-3284.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95669contigH-elongata_contig95669:389..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog2880.D8LI42
EggNOG OGs2E8XM@1,2SFC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.0942125-CDS-H-elongata_contig95669:388..5891622931351.0942125-CDS-H-elongata_contig95669:388..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95669 389..589 -
1691679801.176815-CDS-H-elongata_contig95669:388..5891691679801.176815-CDS-H-elongata_contig95669:388..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95669 389..589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.114625-UTR-H-elongata_contig95669:589..6011622931351.114625-UTR-H-elongata_contig95669:589..601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95669 590..601 -
1691679801.1876743-UTR-H-elongata_contig95669:589..6011691679801.1876743-UTR-H-elongata_contig95669:589..601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95669 590..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95669.16970.1prot_H-elongata_contig95669.16970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95669 389..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95669.16970.1

>prot_H-elongata_contig95669.16970.1 ID=prot_H-elongata_contig95669.16970.1|Name=mRNA_H-elongata_contig95669.16970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MATDVADVDEFRLRLLEAVLGLYSNHPMNYGELEARFHALSFFLCALPYY
ESRELKGLALKTLEVIC
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mRNA from alignment at H-elongata_contig95669:389..601-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95669.16970.1 ID=mRNA_H-elongata_contig95669.16970.1|Name=mRNA_H-elongata_contig95669.16970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig95669:389..601- (Himanthalia elongata Himel1 dioecious)
GGCGTGGGAGAGATGGCAACGGACGTGGCGGACGTGGACGAGTTCAGGCT
GCGGCTGCTGGAGGCCGTTCTGGGGCTGTACAGCAACCACCCCATGAACT
ACGGCGAGCTGGAGGCGAGGTTCCACGCCCTCTCCTTCTTTCTGTGTGCG
CTTCCGTATTACGAGAGCCGGGAGCTTAAGGGACTTGCCCTGAAGACCCT
CGAGGTCATCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig95669:389..601-

>mRNA_H-elongata_contig95669.16970.1 ID=mRNA_H-elongata_contig95669.16970.1|Name=mRNA_H-elongata_contig95669.16970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig95669:389..601- (Himanthalia elongata Himel1 dioecious)
ATGGCAACGGACGTGGCGGACGTGGACGAGTTCAGGCTGCGGCTGCTGGA
GGCCGTTCTGGGGCTGTACAGCAACCACCCCATGAACTACGGCGAGCTGG
AGGCGAGGTTCCACGCCCTCTCCTTCTTTCTGTGTGCGCTTCCGTATTAC
GAGAGCCGGGAGCTTAAGGGACTTGCCCTGAAGACCCTCGAGGTCATCTG
CATGGCAACGGACGTGGCGGACGTGGACGAGTTCAGGCTGCGGCTGCTGG
AGGCCGTTCTGGGGCTGTACAGCAACCACCCCATGAACTACGGCGAGCTG
GAGGCGAGGTTCCACGCCCTCTCCTTCTTTCTGTGTGCGCTTCCGTATTA
CGAGAGCCGGGAGCTTAAGGGACTTGCCCTGAAGACCCTCGAGGTCATCT
GC
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