mRNA_H-elongata_contig122134.1694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122134.1694.1
Unique NamemRNA_H-elongata_contig122134.1694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: D8LDD1_ECTSI (Similar to ATP binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.870e-13
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +FC+IDAEK PYLTEKLN+FVMPT+LLI GG T+HQ  G
Sbjct:   90 KFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIHQIRG 128
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.940e-12
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +FCRIDAEK PYL EKLN+ VMPT+LL+  GKTVHQ  G
Sbjct:  122 RFCRIDAEKSPYLVEKLNIVVMPTILLVKDGKTVHQIRG 160
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A4D9D6P5_9STRA (Thioredoxin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6P5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-7
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +FC+I+AEK PYL EKLNV++MPT++ I   KT H   G
Sbjct:  118 RFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKG 156
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A7S1CD91_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD91_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.490e-7
Identity = 19/39 (48.72%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +FC++DAEK P+L E+LN++++PT++L+  GKT H   G
Sbjct:  119 KFCKVDAEKSPFLCERLNIWMLPTLVLVKDGKTEHSIVG 157
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A7S1BMM5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMM5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.580e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +F +++AEK  YL EKLN+F+MPT+LL+  GK VH   G
Sbjct:  133 RFVKMNAEKTDYLVEKLNIFMMPTILLVKAGKVVHHIRG 171
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A6V1PIS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIS8_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 7.620e-7
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +F +IDAEK P+L E+LN+F+MPTVL I  GK  H   G
Sbjct:  124 RFVKIDAEKSPFLVERLNIFMMPTVLCIKEGKVAHHLRG 162
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A6U7UPZ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U7UPZ3_9EUGL)

HSP 1 Score: 50.8 bits (120), Expect = 1.780e-6
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +F +I+AEK P+L E+LN+F+MP+++LI  GKT H   G
Sbjct:  117 KFVKINAEKSPFLVERLNIFMMPSIVLIKDGKTEHTIQG 155
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A7S2UTJ6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTJ6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.920e-6
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +F +IDAEK  +L E+LN+F+MPT+LL+  G++ HQ  G
Sbjct:   53 RFVKIDAEKSQFLCERLNIFMMPTLLLVKDGQSFHQIRG 91
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: E9J3T6_SOLIN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9J3T6_SOLIN)

HSP 1 Score: 49.3 bits (116), Expect = 4.910e-6
Identity = 18/39 (46.15%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +FC+++ E+CP+LTE+L + ++PT+ LI  GKTV +  G
Sbjct:   57 RFCKLNVERCPFLTERLRIKIIPTITLIVNGKTVGKLIG 95
[Close]
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Match: A0A7S2XYB6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.170e-6
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG 117
            +F +IDAEK  +L E+LN+F+MPT+LL+  G++ HQ  G
Sbjct:  122 RFVKIDAEKSQFLCERLNIFMMPTLLLVKDGQSFHQIRG 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122134.1694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDD1_ECTSI1.870e-1374.36Similar to ATP binding protein n=1 Tax=Ectocarpus ... [more]
A0A836CBP1_9STRA8.940e-1271.79ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A4D9D6P5_9STRA1.500e-756.41Thioredoxin domain-containing protein n=3 Tax=Mono... [more]
A0A7S1CD91_9STRA3.490e-748.72Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1BMM5_9STRA7.580e-753.85Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6V1PIS8_HETAK7.620e-756.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U7UPZ3_9EUGL1.780e-651.28Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2UTJ6_9STRA2.920e-651.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
E9J3T6_SOLIN4.910e-646.15Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S2XYB6_9STRA5.170e-651.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122134contigH-elongata_contig122134:1838..1954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D8LDD1
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.014042-CDS-H-elongata_contig122134:1837..19541622929719.014042-CDS-H-elongata_contig122134:1837..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122134 1838..1954 -
1691679131.3145971-CDS-H-elongata_contig122134:1837..19541691679131.3145971-CDS-H-elongata_contig122134:1837..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122134 1838..1954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122134.1694.1prot_H-elongata_contig122134.1694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122134 1838..1954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122134.1694.1

>prot_H-elongata_contig122134.1694.1 ID=prot_H-elongata_contig122134.1694.1|Name=mRNA_H-elongata_contig122134.1694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
QFCRIDAEKCPYLTEKLNVFVMPTVLLIDGGKTVHQASG
back to top

mRNA from alignment at H-elongata_contig122134:1838..1954-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122134.1694.1 ID=mRNA_H-elongata_contig122134.1694.1|Name=mRNA_H-elongata_contig122134.1694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig122134:1838..1954- (Himanthalia elongata Himel1 dioecious)
CAGTTCTGCAGGATTGACGCCGAGAAATGCCCCTACCTCACCGAAAAGCT
GAACGTGTTTGTGATGCCCACCGTTCTTCTCATCGATGGGGGAAAGACCG
TGCACCAGGCGAGTGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig122134:1838..1954-

>mRNA_H-elongata_contig122134.1694.1 ID=mRNA_H-elongata_contig122134.1694.1|Name=mRNA_H-elongata_contig122134.1694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig122134:1838..1954- (Himanthalia elongata Himel1 dioecious)
CAGTTCTGCAGGATTGACGCCGAGAAATGCCCCTACCTCACCGAAAAGCT
GAACGTGTTTGTGATGCCCACCGTTCTTCTCATCGATGGGGGAAAGACCG
TGCACCAGGCGAGTGGACAGTTCTGCAGGATTGACGCCGAGAAATGCCCC
TACCTCACCGAAAAGCTGAACGTGTTTGTGATGCCCACCGTTCTTCTCAT
CGATGGGGGAAAGACCGTGCACCAGGCGAGTGGA
back to top