mRNA_H-elongata_contig122126.1693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122126.1693.1
Unique NamemRNA_H-elongata_contig122126.1693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: D7FK35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK35_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.930e-26
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRSGGV 219
            +M+GMVGGARTALEVGRLLLS+DPLGDPMGCLLALDS+AL SR+G FL+ELHRS+LP+G S  R + + + G 
Sbjct:  376 QMAGMVGGARTALEVGRLLLSLDPLGDPMGCLLALDSHALTSRQGGFLIELHRSKLPVGRSPSRAAEAFASGA 448
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: A0A6H5LA68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA68_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.680e-25
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRSGGV 219
            +M+GMVGGARTALEV RLLLS+DPLGDPMGCLLALDS+ALASR+G FL+ELHRS+LP+G S  R + + + G 
Sbjct:  174 QMAGMVGGARTALEVCRLLLSLDPLGDPMGCLLALDSHALASRQGEFLIELHRSKLPVGRSPSRAAEAFASGA 246
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: A0A835ZGE8_9STRA (Transcriptional repressor TCF25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.620e-13
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   13 MVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFS 183
            M+G  RTA+EV  LLLS+DP+GDPMG LL +D +ALA +EG F+L L  S LPIGFS
Sbjct:  382 MMGCRRTAMEVSHLLLSLDPIGDPMGALLCVDCHALACKEGRFVLSLAASGLPIGFS 438
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: G4YZT6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZT6_PHYSP)

HSP 1 Score: 63.2 bits (152), Expect = 6.560e-10
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRS 210
            K  G  G  R+A E  +LLLS+DP GDPM  LLA+D YAL SR+  FL++L  S+ P   +V+RL+SS +
Sbjct:  804 KQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCRFLIDLFGSKTP---AVDRLASSEA 870
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: H3GG52_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG52_PHYRM)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRS 210
            K  G  G  R+A E  +LLLS+DP GDPM  +LA+D YAL SR+  FL++L  S+ P   +V+R +SS S
Sbjct:  611 KQVGRRGCMRSAFETAKLLLSLDPQGDPMNVILAIDYYALTSRQCQFLIDLSNSKTP---AVDRFASSDS 677
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: F0WU08_9STRA (Uncharacterized protein AlNc14C262G9831 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WU08_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.250e-9
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRSGGV 219
            + +G  G  ++A E+ R++ S+DP GDPM  +LA+D YALASR+  F+LEL  + +P   +++RLSS  S  +
Sbjct:  332 QQAGRRGCVKSAFELARMIFSLDPHGDPMSVVLAMDYYALASRQYTFILELMDANIP---AIDRLSSCESSSL 401
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: M4BN88_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN88_HYAAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.140e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRSG 213
            K  G  G  R+A E  +LLLS+DP GDPM  LLA+D YAL SR+  FL++L  S+ P   +V+R +S   G
Sbjct:  450 KQVGRRGCMRSAFETSKLLLSMDPQGDPMNVLLAIDYYALTSRQCQFLIDLVESKTP---AVDRFASGDKG 517
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: W2QZ72_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=W2QZ72_PHYPN)

HSP 1 Score: 60.8 bits (146), Expect = 4.200e-9
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRS 210
            K  G  G  R+A E  +LLLS+DP GDPM  LLA+D YAL SR+  FL++L  S+ P   +V+R +S  +
Sbjct:  325 KQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQFLIDLFESKTP---AVDRFASDEA 391
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BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: V9EAW3_PHYPR (EDR2_C domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=V9EAW3_PHYPR)

HSP 1 Score: 60.8 bits (146), Expect = 4.250e-9
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRS 210
            K  G  G  R+A E  +LLLS+DP GDPM  LLA+D YAL SR+  FL++L  S+ P   +V+R +S  +
Sbjct:  578 KQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQFLIDLFESKTP---AVDRFASDEA 644
[Close]
BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Match: A0A662WL33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL33_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.960e-9
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 KMSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLELHRSRLPIGFSVERLSSSRSG 213
            K  G  G  R+A E  +LLLS+DP GDPM  LLA+D YAL SR+  FL++L  +++    +V+R ++S SG
Sbjct:  214 KQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQFLVDLFDAKIE---AVDRFATSESG 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122126.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK35_ECTSI6.930e-2671.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA68_9PHAE3.680e-2571.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGE8_9STRA3.620e-1363.16Transcriptional repressor TCF25-domain-containing ... [more]
G4YZT6_PHYSP6.560e-1050.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3GG52_PHYRM1.670e-948.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
F0WU08_9STRA2.250e-942.47Uncharacterized protein AlNc14C262G9831 n=1 Tax=Al... [more]
M4BN88_HYAAE3.140e-947.89Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W2QZ72_PHYPN4.200e-947.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
V9EAW3_PHYPR4.250e-947.14EDR2_C domain-containing protein n=6 Tax=Phytophth... [more]
A0A662WL33_9STRA4.960e-946.48Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122126contigH-elongata_contig122126:166..384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D7FK35
Preferred nameTCF25
KEGG koko:K14206
KEGG TC2.A.17.4.1,2.A.17.4.2
KEGG Pathwayko04974,map04974
GOsGO:0000122,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006412,GO:0006414,GO:0006417,GO:0006508,GO:0006511,GO:0006518,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0072344,GO:0072359,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990112,GO:1990116,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ribosome-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2422@1,KOG2422@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.9615262-CDS-H-elongata_contig122126:165..3811622929718.9615262-CDS-H-elongata_contig122126:165..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122126 166..381 -
1691679131.2953842-CDS-H-elongata_contig122126:165..3811691679131.2953842-CDS-H-elongata_contig122126:165..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122126 166..381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.975782-UTR-H-elongata_contig122126:381..3841622929718.975782-UTR-H-elongata_contig122126:381..384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122126 382..384 -
1691679131.3047318-UTR-H-elongata_contig122126:381..3841691679131.3047318-UTR-H-elongata_contig122126:381..384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122126 382..384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122126.1693.1prot_H-elongata_contig122126.1693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122126 166..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122126.1693.1

>prot_H-elongata_contig122126.1693.1 ID=prot_H-elongata_contig122126.1693.1|Name=mRNA_H-elongata_contig122126.1693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MSGMVGGARTALEVGRLLLSVDPLGDPMGCLLALDSYALASREGAFLLEL
HRSRLPIGFSVERLSSSRSGGV
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mRNA from alignment at H-elongata_contig122126:166..384-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122126.1693.1 ID=mRNA_H-elongata_contig122126.1693.1|Name=mRNA_H-elongata_contig122126.1693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig122126:166..384- (Himanthalia elongata Himel1 dioecious)
AAGATGTCGGGGATGGTGGGCGGAGCGCGCACGGCTCTTGAAGTCGGCAG
ACTCCTCTTGTCCGTCGACCCCCTCGGTGATCCCATGGGATGCCTCCTGG
CACTTGACAGCTACGCCCTCGCCAGTCGTGAAGGGGCGTTCTTGTTAGAG
CTTCATCGATCCAGGCTGCCCATTGGGTTTTCGGTCGAAAGGCTGTCGAG
CTCAAGATCTGGAGGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig122126:166..384-

>mRNA_H-elongata_contig122126.1693.1 ID=mRNA_H-elongata_contig122126.1693.1|Name=mRNA_H-elongata_contig122126.1693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig122126:166..384- (Himanthalia elongata Himel1 dioecious)
ATGTCGGGGATGGTGGGCGGAGCGCGCACGGCTCTTGAAGTCGGCAGACT
CCTCTTGTCCGTCGACCCCCTCGGTGATCCCATGGGATGCCTCCTGGCAC
TTGACAGCTACGCCCTCGCCAGTCGTGAAGGGGCGTTCTTGTTAGAGCTT
CATCGATCCAGGCTGCCCATTGGGTTTTCGGTCGAAAGGCTGTCGAGCTC
AAGATCTGGAGGTGTGATGTCGGGGATGGTGGGCGGAGCGCGCACGGCTC
TTGAAGTCGGCAGACTCCTCTTGTCCGTCGACCCCCTCGGTGATCCCATG
GGATGCCTCCTGGCACTTGACAGCTACGCCCTCGCCAGTCGTGAAGGGGC
GTTCTTGTTAGAGCTTCATCGATCCAGGCTGCCCATTGGGTTTTCGGTCG
AAAGGCTGTCGAGCTCAAGATCTGGAGGTGTG
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