mRNA_H-elongata_contig95057.16916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95057.16916.1
Unique NamemRNA_H-elongata_contig95057.16916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.670e-18
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPR-GRQVPPAAAQLCVANTHLY--SNPELPDVKLWQCNALLQELEG------FVHSRQLPLLV 210
            I QVAVLE+LQRPR GR   P   QLC+ANTHLY  +NPELPDVKLWQC+ALLQELE       FV SRQLPL+V
Sbjct:  444 IAQVAVLELLQRPRAGRMGGPQ--QLCIANTHLYRQANPELPDVKLWQCHALLQELEHLVELEHFVMSRQLPLMV 516
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 2.010e-17
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRP--RG---RQVP-PAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            I QVAVLEVLQ P  RG   R+ P P    LC+ANTHLYS+PE PDVKLWQ  AL+QELE FV SR LPL+V
Sbjct:  430 IAQVAVLEVLQTPAQRGGAPRRPPGPQNTHLCIANTHLYSHPEFPDVKLWQTQALMQELEHFVLSRNLPLMV 501
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A4D9CX26_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX26_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.540e-14
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q  VLEVL RPRG +     + +C+ANTHLYS+PE PDVKLWQC+ LLQ LEG      +PL++
Sbjct:  259 VAQAVVLEVLGRPRGGRH--GGSMVCMANTHLYSHPEFPDVKLWQCHQLLQWLEGLTLPSNMPLVL 322
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: W7UA28_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA28_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.580e-14
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q  VLEVL RPRG +     + +C+ANTHLYS+PE PDVKLWQC+ LLQ LEG      +PL++
Sbjct:  393 VAQAVVLEVLGRPRGGRH--GGSMVCMANTHLYSHPEFPDVKLWQCHQLLQWLEGLTLPSNMPLVL 456
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A067BWF9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BWF9_SAPPC)

HSP 1 Score: 73.9 bits (180), Expect = 9.030e-14
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQV-PPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q+ VL+VL    G  V  P    +CVAN H++SNP+ PDVKLWQ N LLQ+LE   +SR+LP+++
Sbjct:  400 VSQIVVLDVLPEANGSMVRKPVLPSICVANVHIFSNPDFPDVKLWQTNTLLQQLEQIANSRRLPIIL 466
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A7S1FRM5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRM5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.090e-14
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q+ VLE  Q   GR       Q+C+ANTHLYSN + PDVKLWQ   LLQELE FV SR LPL++
Sbjct:  385 VAQLIVLEFAQPSSGRNSARDQNQVCIANTHLYSNKDFPDVKLWQTWQLLQELETFVLSRNLPLMI 450
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A1V9YAY5_9STRA (Carbon catabolite repressor protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAY5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.730e-13
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPR-GRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q+ VL+VL  P  G    P    +CV N H++SNPE PDVKLWQ N LLQ++E   +SR+LP++V
Sbjct:  398 VAQIVVLDVLPEPASGLARKPVLPSICVTNVHIFSNPEFPDVKLWQTNTLLQQMEQIANSRRLPIIV 464
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: T0RBU2_SAPDV (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RBU2_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 3.240e-13
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQV-PPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSRQLPLLV 210
            + Q+ VL+VL    G  V  P    +CVAN H++SNP+ PDVKLWQ N LLQ+LE   +SR+LP+++
Sbjct:  400 VSQIVVLDVLPDANGSLVRKPVLPSICVANVHIFSNPDFPDVKLWQTNTLLQQLEQIANSRRLPIIL 466
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BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A6U1PWN2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1PWN2_CYCTE)

HSP 1 Score: 70.5 bits (171), Expect = 1.380e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPRGRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSR--QLPLLV 210
            + Q+ VLE+ Q    R      +Q+C+ANTHLYSN + PDVKLWQ   LLQELE FV SR  QLPL++
Sbjct:  196 VAQLVVLELAQPSMSRPGRDQISQVCIANTHLYSNKDFPDVKLWQTWQLLQELETFVLSRGTQLPLMI 263
[Close]
BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Match: A0A7S3L629_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L629_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.280e-12
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:   13 IYQVAVLEVLQRPR-GRQVPPAAAQLCVANTHLYSNPELPDVKLWQCNALLQELEGFVHSR--QLPLLV 210
            + Q+ VLE +Q  R GR++     Q+C+ANTHLYSN + PDVKLWQ   LLQELE F+ SR   LPL++
Sbjct:  461 VAQLVVLEFVQSTRTGREI----NQVCIANTHLYSNKDFPDVKLWQSWQLLQELESFIMSRGANLPLII 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95057.16916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3I4_9STRA1.670e-1869.33Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
A0A6S9ETF7_HETAK2.010e-1766.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CX26_9STRA3.540e-1454.55Endo/exonuclease/phosphatase domain-containing pro... [more]
W7UA28_9STRA3.580e-1454.55Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
A0A067BWF9_SAPPC9.030e-1449.25Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S1FRM5_9STRA9.090e-1456.06Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1V9YAY5_9STRA1.730e-1349.25Carbon catabolite repressor protein n=1 Tax=Achlya... [more]
T0RBU2_SAPDV3.240e-1349.25Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6U1PWN2_CYCTE1.380e-1254.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3L629_9STRA5.280e-1253.62Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95057contigH-elongata_contig95057:1435..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7G3Q4
KEGG koko:K12603
KEGG Pathwayko03018,map03018
GOsGO:0000271,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0006073,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009987,GO:0010467,GO:0016051,GO:0016070,GO:0016071,GO:0019252,GO:0032991,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1990904
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.5284398-CDS-H-elongata_contig95057:1434..16441622931345.5284398-CDS-H-elongata_contig95057:1434..1644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95057 1435..1644 +
1691679798.8115754-CDS-H-elongata_contig95057:1434..16441691679798.8115754-CDS-H-elongata_contig95057:1434..1644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95057 1435..1644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95057.16916.1prot_H-elongata_contig95057.16916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95057 1435..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95057.16916.1

>prot_H-elongata_contig95057.16916.1 ID=prot_H-elongata_contig95057.16916.1|Name=mRNA_H-elongata_contig95057.16916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MIFRIYQVAVLEVLQRPRGRQVPPAAAQLCVANTHLYSNPELPDVKLWQC
NALLQELEGFVHSRQLPLLV
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mRNA from alignment at H-elongata_contig95057:1435..1644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95057.16916.1 ID=mRNA_H-elongata_contig95057.16916.1|Name=mRNA_H-elongata_contig95057.16916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig95057:1435..1644+ (Himanthalia elongata Himel1 dioecious)
ATGATTTTCCGCATTTACCAGGTGGCGGTGTTGGAGGTCCTTCAGAGGCC
TCGTGGACGCCAGGTGCCTCCCGCCGCGGCACAGCTTTGTGTGGCCAACA
CGCATCTCTACTCCAACCCGGAGCTGCCGGACGTGAAGCTGTGGCAGTGT
AACGCTCTCCTGCAGGAGCTCGAGGGGTTCGTGCATAGCCGACAGCTGCC
GCTTCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig95057:1435..1644+

>mRNA_H-elongata_contig95057.16916.1 ID=mRNA_H-elongata_contig95057.16916.1|Name=mRNA_H-elongata_contig95057.16916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig95057:1435..1644+ (Himanthalia elongata Himel1 dioecious)
ATGATTTTCCGCATTTACCAGGTGGCGGTGTTGGAGGTCCTTCAGAGGCC
TCGTGGACGCCAGGTGCCTCCCGCCGCGGCACAGCTTTGTGTGGCCAACA
CGCATCTCTACTCCAACCCGGAGCTGCCGGACGTGAAGCTGTGGCAGTGT
AACGCTCTCCTGCAGGAGCTCGAGGGGTTCGTGCATAGCCGACAGCTGCC
GCTTCTGGTGATGATTTTCCGCATTTACCAGGTGGCGGTGTTGGAGGTCC
TTCAGAGGCCTCGTGGACGCCAGGTGCCTCCCGCCGCGGCACAGCTTTGT
GTGGCCAACACGCATCTCTACTCCAACCCGGAGCTGCCGGACGTGAAGCT
GTGGCAGTGTAACGCTCTCCTGCAGGAGCTCGAGGGGTTCGTGCATAGCC
GACAGCTGCCGCTTCTGGTG
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