mRNA_H-elongata_contig9505.16915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9505.16915.1
Unique NamemRNA_H-elongata_contig9505.16915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.520e-25
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  382 GLGMGEDARKML----DLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKTEPV-----FINLRKVVFIGHSGAGKTSLIKSI--KAGKGQLALEKELESVGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRFMNK 834
             LG  E A + +     L S  N  L DNPW  PP  +V +G+ A++KY  ++ + E        +N+ KVV IG  GAGKTSL+ SI  + G   +   +E+ +VG+ ++ H   +GR     V+ YD AGQV+YYG+HQ FLT RALY+LVWD SR   K
Sbjct:  317 ALGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELRRHHQRNGRI----VEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGK 474
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BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.460e-24
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 1 
Query:  382 GLGMGEDARKMLDLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKTEPV-----FINLRKVVFIGHSGAGKTSLIKSIKAGKG--QLALEKELESVGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRFMNK 834
             +G  E A + L   S C   L  NPW  PP  VVEKG+ A++ Y  ++ K E        + L KVV +G S AGKTSL+ SI  G+G   +    E+ +VG+ +  H  +      T V+ YD AGQV+YYG+HQ FLT RALY+LVWD  R   K
Sbjct:  160 AVGEAEHALRWLTRRSECLIVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRGLPTVGTPAEVSTVGIELLRHNLQG-----TAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGK 312
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BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.710e-21
Identity = 62/160 (38.75%), Postives = 96/160 (60.00%), Query Frame = 1 
Query:  367 ELVVPGLGMGEDARKMLDLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKTEPV-----FINLRKVVFIGHSGAGKTSLIKSIKAGKGQLA--LEKELESVGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRF 825
            E +  GLG  EDA ++++ L   + YL+ NPW  PP  VVE G+ A+K+Y  ++ + +        + L KVV +G + AGKTSL+ SI AG+G        +  +VG+ ++  + +     DT V+ +D AGQV+Y G+HQ FLT RALY+LV D +++
Sbjct:    3 ENIGRGLGETEDALRLVERLGD-SLYLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQ-----DTKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKY 156
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.080e-19
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = 1 
Query:  379 PGLGMGEDARKMLDLLSRCNHY-LNDNPWECPPAPVVEKGIDAMKKYYDEL--GKTEPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELES-VGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASR 822
            PG  +  D  ++LD+        L+ NPWE PP  +V  G+ A++ YY+ +  G T  V   L KVV IG    GKTSL +SI  G   +     +ES V V V+DHK +        ++++D AGQV YYGL QLFLT RA+Y+LVWDA++
Sbjct:  388 PG-TLPVDLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPL-KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGH-----PIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAK 532
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.720e-19
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:  445 LNDNPWECPPAPVVEKGIDAMKKYYDEL--GKTEPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELES-VGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASR 822
            L+ NPWE PP  +V  G+ A++ YYD +  G T  V   L KVV IG    GKTSL +SI  G   +     +ES V V V+DHK +        ++++D AGQV YYGL QLFLT RA+Y+LVWDA++
Sbjct:  503 LSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPL-KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGH-----PIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAK 625
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.110e-18
Identity = 69/176 (39.20%), Postives = 98/176 (55.68%), Query Frame = 1 
Query:  370 LVVPGLGMGEDARKMLDLLSRCNHY----LNDNPWECPPAPVVEKGIDAMKKYYDEL--GKTEPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELES-VGVSVQDHKFE--SGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRF--MNKNKVRYLTLSP 864
            L VPG  +      +LD   R +      L+ NPWE PP  +V  G+ A++ Y++ +  G T  V   L KVV +G    GKTSL  SIKAGK  +     ++S V V VQDH  +    + G   ++++D AGQ  YYGL QLFLT RA+Y+LVWDA +   M++  +  L ++P
Sbjct:    2 LCVPG-TLPVALASLLDSFDRLHSVGGLDLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPL-KVVIVGMETVGKTSLRCSIKAGKPCMTRGGGVDSTVHVDVQDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAP 175
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.390e-18
Identity = 62/141 (43.97%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:  412 MLDLLSRCNHY-LNDNPWECPPAPVVEKGIDAMKKYYDEL--GKTEPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELES-VGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASR 822
            +LD L R     +  NPWE PP  +V  GI A++ Y++ +  G T  V   L KVV +G    GKTSL +SIK GK  +      ES V V V+DH  +        ++++D AGQV YYGL QLFLT RA+Y+LVWDA++
Sbjct:  326 LLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPL-KVVIVGKETVGKTSLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGH-----PIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAK 460
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.050e-16
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:  376 VPGLGMGEDARKMLDLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKT--EPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELESVGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRF 825
            + G  + +    +L  LSR    +++NPW+ PP  VV KGI A+++Y+ +L      PV   + KVV +G  GAGKTSL +S++ G+       E  +V + V+             +++YD AGQV Y GL Q+FL+ RA+ +LV D   F
Sbjct:  222 LAGNALPKQLEALLATLSRLGFLVHENPWQEPPEAVVSKGISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKTSLRQSLRTGRPTPTSGSEESTVQIDVEQMDVNG-----VTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAF 368
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.850e-16
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1 
Query:  445 LNDNPWECPPAPVVEKGIDAMKKYYDEL--GKTEPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELES-VGVSVQDHKFE--SGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRF--MNKNKVRYLTLSP 864
            L+ NPWE PP  +V  G+ A++ Y++ +  G T  V   L KVV +G    GKTS    IKAGK  +     ++S V V V+DH  +    + G   ++++D AGQ  YYGL QLFLT RA+Y+LVWDA +   M++  +  L ++P
Sbjct:  196 LSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPL-KVVIVGTETVGKTS----IKAGKPCMTRGGGVDSTVHVDVEDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAP 337
[Close]
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.010e-16
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:  376 VPGLGMGEDARKMLDLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKT--EPVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELESVGVSVQDHKFESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRF 825
            + G  + +    +L  LS+   +++ NPW+ PP  VV KGI A+++Y+ +L      PV   + KV+ +G  GAGKTSL +S++ G+       E  +V + V+             +++YD AGQV Y GL Q+FL+ RA+ +LV D   F
Sbjct:  186 LAGSSLPKQLEALLATLSQLGLHVHTNPWQEPPEAVVSKGIPAVREYFTDLFAEGIAPVGRKMIKVILVGQEGAGKTSLRQSLRTGRPTPTSGPEESTVQIDVEQMDVNG-----VTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDTGAF 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9505.16915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX5_ECTSI3.520e-2541.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE1.460e-2442.41Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE9.710e-2138.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI7.080e-1942.11LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FX69_ECTSI9.720e-1946.51LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JRW5_9PHAE1.110e-1839.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI5.390e-1843.97LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL98_ECTSI1.050e-1635.53LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JQZ5_9PHAE4.850e-1640.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL89_ECTSI6.010e-1634.21LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9505contigH-elongata_contig9505:1300..5310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1184
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9505.16915.1prot_H-elongata_contig9505.16915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9505 1599..4920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.3834221-UTR-H-elongata_contig9505:1299..15981622931345.3834221-UTR-H-elongata_contig9505:1299..1598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9505 1300..1598 -
1691679798.7631986-UTR-H-elongata_contig9505:1299..15981691679798.7631986-UTR-H-elongata_contig9505:1299..1598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9505 1300..1598 -
1622931345.4680731-UTR-H-elongata_contig9505:4920..53101622931345.4680731-UTR-H-elongata_contig9505:4920..5310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9505 4921..5310 -
1691679798.7972195-UTR-H-elongata_contig9505:4920..53101691679798.7972195-UTR-H-elongata_contig9505:4920..5310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9505 4921..5310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.394997-CDS-H-elongata_contig9505:1598..18811622931345.394997-CDS-H-elongata_contig9505:1598..1881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9505 1599..1881 -
1691679798.7761962-CDS-H-elongata_contig9505:1598..18811691679798.7761962-CDS-H-elongata_contig9505:1598..1881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9505 1599..1881 -
1622931345.4481585-CDS-H-elongata_contig9505:4708..49201622931345.4481585-CDS-H-elongata_contig9505:4708..4920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9505 4709..4920 -
1691679798.785303-CDS-H-elongata_contig9505:4708..49201691679798.785303-CDS-H-elongata_contig9505:4708..4920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9505 4709..4920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9505.16915.1

>prot_H-elongata_contig9505.16915.1 ID=prot_H-elongata_contig9505.16915.1|Name=mRNA_H-elongata_contig9505.16915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MGEDARKMLDLLSRCNHYLNDNPWECPPAPVVEKGIDAMKKYYDELGKTE
PVFINLRKVVFIGHSGAGKTSLIKSIKAGKGQLALEKELESVGVSVQDHK
FESGRKGDTDVKLYDLAGQVEYYGLHQLFLTERALYVLVWDASRFMNKNK
VRYLTLSPTNKFDG*
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mRNA from alignment at H-elongata_contig9505:1300..5310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9505.16915.1 ID=mRNA_H-elongata_contig9505.16915.1|Name=mRNA_H-elongata_contig9505.16915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4011bp|location=Sequence derived from alignment at H-elongata_contig9505:1300..5310- (Himanthalia elongata Himel1 dioecious)
CTCTTTGACTTACCACGAGCAGGATTGGCAACCATCCGGTTGATCAAACA
CACACACATTCACACTAGTTGTGGTATATCAGTATCCTTCCTTGAATGAG
CAGGGGATACTTATCATGCTTAAACTGGGCGGTAATGCCATCGTGGGTCC
TAGTATAATCGGGGGGAGCTCATTACTGTTTCCTTTACAGCATAACGATT
TTTGAACGTCAGTTTTTGTTTTACCGAATGTTGTTCGTCGAATCACGCCC
AACAACCAGTTTCAATGCATCAGCTAGATTTAATAATTGCAGGTGACATG
AGGAATTTCTTCCTCTCGTATGCACTCGACGTTTTTCGTCTTTACTAGTT
GCTATTGTTCTATCGCGAATTGGTTGTGCCAGGGTTGGGAATGGGTGAAG
ACGCACGCAAGATGCTCGATCTGCTGTCGCGTTGTAATCATTATCTTAAC
GACAATCCATGGGAATGCCCTCCAGCACCTGTGGTCGAGAAGGGCATCGA
TGCGATGAAGAAGTACTACGACGAGCTCGGAAAGACGGAACCTGTCTTTA
TCAACTTGCGCAAGGTCGTGTTCATCGGACACAGCGGAGCTGGCAAGACC
AGGTGCGACCAATCATGATTGAACACACGAGATTCAGCCTGGGCTGAGAG
AATAAGTAGACTGACGCGGGACGGGACGGCCGAACCCGTCTCCCGAGGTC
AACCTTTCAGGCGCTAACGGCAATAGGAAGAATTCATTTTCCCTGTTCAG
CTGACCACAAACGGGAGGCAACAAAATTCGGTTGATCTTTACTCTGCTTT
ATTTGATGACCAGACGGACACTGATGGCTAACTCAGTTACCACTACGCAG
AGCGACGATTCATCTTATAGTAGGGAATTGACTATATGAATATGACATAA
TAGCGCTTGCTGACAAACGACGACCCCCCTTTTTGGGGAGTGAAACTGGA
GTGAAAGTATAATGAATAACAAAGGTATGATAATTAGTTGAGTGACTTGT
GGCCTACAGAAGACCCAACTCTTCTTGTGGAACTAGATGGCGTCACGACA
ACGCTGTTGCGCAATCGCAATGTTGTGGGTCAGATCCTCTAAGAAATAAC
GCATTTAACTGACCCTGGTTCGTATCGACTGCGGCAATATATTTGATCGT
AGTTTGAGCTGTTTTCAAGCCTAACTTTACTACCACATAGGCAGTGTGAC
CCTAAATCCTGCTACTGCTACAGGACATACTACTGTTACTGTTGTGATTA
CTTTGAAAGTTGAGAGGCGTGCCGAGGTGGTTGGAGTTTTCTTCTTCCCT
CGCTATCCGCATGTTTTCGAATTCCTTCAGTTTCATACGCCCAGCAGACC
TCGTAGATAATTGTTTATTAAAAAATAACCGGTAATCGGCCTTTGTTTCC
ATGCTTTCCCCGAATCTGGGACTTTTTTTTAAGTGTCAAGGAGTGTGTCG
TGCTGGCTTGCACATGGCTCCACGTCACGCAGCCGTACAGCGTTGACTCG
AGTACCTTAAATTTCAGCATCCGCATTTTGAGCTCCAGGGGGGCGCTGGG
TCGGTCGTACAGTTCAAGGGTGTATTTCCGGAAGCTGCACCAAGCGTTGC
GTATGAGCCGATTGACATCGATGGGCAGGGCCGTGTTATGGTTGACGTTC
CTCTCGAGGTATACAAACTCGTTCGTTTGGTTATACGTTACTCAAACTAC
GTTGAGGACTGCTGGCTCAGTGCCCGTATACTCTCGGTAGTAAACCCGAA
CGGTACGCAATTGCATGACCGGGTTAAATCGGGATTGACTCGATGGCGGT
TGACGGTAAAGATGGACGCCTCGCGGAAAACGGAAGAATCGAGAGGATCC
AGGGAGTAAGCACCAGATTCAGCCTGGGTTGGGAGAATGAGCAGGCTGAC
GCGGGACGGGACTGCTGAACCCGTCTCGCGAGACATAATTCTCAGTCACG
AAAGGGGACAAGGAAAAATTATTTTCCCTGCTCAGCTGACCACGAGCAGA
GGACAACCAAATCCGGTTGATCTTACTCTGGTAAATGTAACCATACATAC
ACCTGGTCGGCTTCTTCTACGCTGAATTTGGCTGTGGCCTCCTGCAATCC
CTTCTTGAGTAAACACATGATCTCAGTTTTGGCCTCCGATACGGTGAGAG
ACCAAACGCTGCGCAAACTACCACAACCACTCCCATCGTCTTCCTGACCT
GCTCGGGCGATTGCAAGACGACTCCGGCATCATCAGCATGTAGTATGCCC
CATGGCGAGATCGTCAGGGCTACTTGCTCAGTGGTGGTTGCTATCCCCCG
CCTCCCCACCCTCGTTTATTTTTCTGAAGTGCACCAGGGCGTCCATGGTG
TTGCTATCTGCCTTAAGCGTGTATCGACCACTTTTATTACCGCCGCGGTA
AATATATTGAAAACGATGGGGAAAAACACAGACTCTTGACGAAGGCCCTA
TTCCACAGCGAACCACCCCGAGCAAACCCCGTCATCGAACCGCACACATG
GTTTCATGCCATCATGGAATTGACGAATGATCGAGATCATCTTTCGTGAC
ATATAAAAACGGGTGAGTACTGTTCAGAGGAGGGTTCGGTCAACATAATC
GTATGTTTTTATAAGATCGATAAAGCGTACATACAACGGAAACCGTTTCT
TCTCTGCCAACTCTTGTAGTCGACTGTGGGAACGTGATGCACGAGATCTT
GTTTTCATTTTTTGCCTCTACCTCCACTACACTTTCCTCTTTCGCTGGGC
AGGCGGCTTTACCTGCCAGTAGTCAATCTACGCGTTGATGCCGTTGTTGT
GTTGCCTATCATCCTTAGAGTTGCGCATTGCATTGCCACCGTTTCCATCA
CAGCGCTAACGGGGAACTTCATCGTTTATATTTTTACGGTATGGCGTGGG
GCGCGATGCCAGTACTGGCGTTCGTCCGGGAAGCTTGAGAGCGTCCGGAA
AGGTCCAAGGTTATGGGTAACCATAACTAATGGCCCACGCGTTATCGTTG
TGAACCATGTTTATTAAAAAACAAATAAATGCATTAAGACCCTTCGAACA
TCCACGCCTTCTTAGTACCATTAGAGGTGTAGGCCAGGAGACCAACTATT
TTCAGGTCCGAATGTGGACATTCATACATTTAAGCACAAAATCGTCATAT
GTGATTATTCGTGTTCCCCGGTTGTAAATTTATAGGGTCAGCGTGTAATA
ATGTCGGCGATCCCGTAACTGTCCCGTACACTTATATTATATTGAAGCGC
ATTGTTCGCGTCTGGTGGAGATGATCAATCCGAACTCATTGTTTTTTTGT
GACGTCTACTCTGTTTTTCTCACATTGCTGGGTTAATTTCATCACATGTG
CATTTTGTATAAACGTTTTTCATAGTCTATGCAATGTCGTTTTTGTGCTG
TACACGATGATTCTAACGTCGCTCTAAAGCCTGATCAAGAGTATCAAGGC
CGGGAAAGGGCAACTGGCGCTAGAGAAAGAACTCGAATCTGTTGGAGTCT
CTGTTCAGGATCACAAGTTTGAGAGTGGACGCAAGGGTGACACCGACGTG
AAGCTCTACGACCTGGCAGGTCAAGTGGAATACTATGGTCTGCACCAATT
GTTCCTAACGGAAAGGGCTTTGTACGTCCTGGTGTGGGATGCTTCCAGGT
TTATGAACAAAAACAAGGTAAGGTACTTAACTCTCAGCCCTACGAATAAA
TTTGATGGCTGATGAACTCAAATATATATTTTTTACTCATCGAGAACCAT
TACCAGTATTTCTGTCGGCATTTTTGCTTGGCTCTAGGGTAACGGTCGAA
GCATATGGGTTTCCGACAAAGGCATTCCAGCCCCACTCCTGTGGGTCCTA
AAGCCTCCGGGTGTCATAGTTAGCGTCAACGCGTGTCATTATAGCGTCAT
ACGTAGGGTAAATATTACTTTAGTCCGACGGCCGTAGGGTAAATATTACG
TTAATCGGATAAACGATAGCACTGTTATGTTCTTCGAAAAACGCCTTTGG
GTACGGAAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig9505:1300..5310-

>mRNA_H-elongata_contig9505.16915.1 ID=mRNA_H-elongata_contig9505.16915.1|Name=mRNA_H-elongata_contig9505.16915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig9505:1300..5310- (Himanthalia elongata Himel1 dioecious)
ATGGGTGAAGACGCACGCAAGATGCTCGATCTGCTGTCGCGTTGTAATCA
TTATCTTAACGACAATCCATGGGAATGCCCTCCAGCACCTGTGGTCGAGA
AGGGCATCGATGCGATGAAGAAGTACTACGACGAGCTCGGAAAGACGGAA
CCTGTCTTTATCAACTTGCGCAAGGTCGTGTTCATCGGACACAGCGGAGC
TGGCAAGACCAGATGGGTGAAGACGCACGCAAGATGCTCGATCTGCTGTC
GCGTTGTAATCATTATCTTAACGACAATCCATGGGAATGCCCTCCAGCAC
CTGTGGTCGAGAAGGGCATCGATGCGATGAAGAAGTACTACGACGAGCTC
GGAAAGACGGAACCTGTCTTTATCAACTTGCGCAAGGTCGTGTTCATCGG
ACACAGCGGAGCTGGCAAGACCAGCCTGATCAAGAGTATCAAGGCCGGGA
AAGGGCAACTGGCGCTAGAGAAAGAACTCGAATCTGTTGGAGTCTCTGTT
CAGGATCACAAGTTTGAGAGTGGACGCAAGGGTGACACCGACGTGAAGCT
CTACGACCTGGCAGGTCAAGTGGAATACTATGGTCTGCACCAATTGTTCC
TAACGGAAAGGGCTTTGTACGTCCTGGTGTGGGATGCTTCCAGGTTTATG
AACAAAAACAAGGTAAGGTACTTAACTCTCAGCCCTACGAATAAATTTGA
TGGCTGACCTGATCAAGAGTATCAAGGCCGGGAAAGGGCAACTGGCGCTA
GAGAAAGAACTCGAATCTGTTGGAGTCTCTGTTCAGGATCACAAGTTTGA
GAGTGGACGCAAGGGTGACACCGACGTGAAGCTCTACGACCTGGCAGGTC
AAGTGGAATACTATGGTCTGCACCAATTGTTCCTAACGGAAAGGGCTTTG
TACGTCCTGGTGTGGGATGCTTCCAGGTTTATGAACAAAAACAAGGTAAG
GTACTTAACTCTCAGCCCTACGAATAAATTTGATGGCTGA
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