mRNA_H-elongata_contig95022.16914.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: D8LCN2_ECTSI (Adenine nucleotide translocator 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN2_ECTSI) HSP 1 Score: 243 bits (619), Expect = 1.360e-75 Identity = 132/188 (70.21%), Postives = 156/188 (82.98%), Query Frame = 1
Query: 1 EMRRLIERPASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTG----DSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSSELWENAVLGAASSAMAAVSTQPVDTVKTRVMTK 552
EMRRL++ PA+F GVFKGFSAFLAQAGP+NA FFLFYD+LNA+G +L G+G+G S L TAL HL ASS+ATVP+NLV+TPAEVVKQRLQVG+E+G+SL+A LSI +A+GV GLFVGG+EQL+REIPFNA+ FTVYE LK GSSELW +A LGAASSA A++TQPVDTVKTRVMTK
Sbjct: 215 EMRRLVDGPATFKGVFKGFSAFLAQAGPSNAAFFLFYDSLNAIGAAAIL-GGDGSGGISPSPSSSLWPTAL-HLGASSVATVPANLVRTPAEVVKQRLQVGRESGNSLQAFLSIVRAEGVKGLFVGGKEQLLREIPFNAVQFTVYECLKASLGSSELWADAALGAASSAAGALATQPVDTVKTRVMTK 400
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A6H5JB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB89_9PHAE) HSP 1 Score: 241 bits (614), Expect = 7.260e-74 Identity = 133/191 (69.63%), Postives = 156/191 (81.68%), Query Frame = 1
Query: 1 EMRRLIERPASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGL---LSTALF----HLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSSELWENAVLGAASSAMAAVSTQPVDTVKTRVMTK 552
EM RLI+ PA+F GVFKGFSAFLAQAGP+NA FFLFYDALNA+G +L A D SGG+ LS++L+ HL ASS ATVP+NLV+TPAEVVKQRLQVG+E+G+SL+ALLSI +A+G GLFVGG+EQL+REIPFNA+ FTVYE LK GSSELW +A LGAASSA A++TQPVDTVKTRVMTK
Sbjct: 307 EMLRLIDGPATFKGVFKGFSAFLAQAGPSNAAFFLFYDALNAIGAAAILGA-----DGSGGISPSLSSSLWPTALHLGASSAATVPANLVRTPAEVVKQRLQVGRESGNSLQALLSIVRAEGAKGLFVGGKEQLLREIPFNAVQFTVYECLKASLGSSELWADAALGAASSAAGALATQPVDTVKTRVMTK 492
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A835YUL3_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL3_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.690e-44 Identity = 93/192 (48.44%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 25 PASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTG----------------SSELWENAVLGAASSAMAAVSTQPVDTVKTRVMTK 552
P+S G+F GF FL QAGP+NA FFL +DALN LG L P + L HLAAS LATVPSNL++ P+EV+KQRLQVGQ +G++L+AL +I DG+ GLFVGG QL REIPFNAI F Y+ LK + L +A+LGA ++ A++ TQP+DT KTR+MT+
Sbjct: 133 PSSSKGLFSGFGPFLLQAGPSNAAFFLTFDALNVLG-AALAPGMDPN-----------LTHLAASCLATVPSNLIRIPSEVIKQRLQVGQVSGNALDALRAILSTDGIAGLFVGGTSQLSREIPFNAIQFVAYDALKHALAVAXXXXXXXXXXXXXXDAHLMVDALLGALAAGAASLGTQPMDTTKTRIMTR 312
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A4D9D6P8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6P8_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.900e-24 Identity = 75/174 (43.10%), Postives = 99/174 (56.90%), Query Frame = 1
Query: 43 VFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILK---VCTGS---SELWENAVLGAASSAMAAVSTQPVDTVKTRVM 546
+F G L AGP NA FF+ YD L AL + P G L LAAS LA++PSNL++ PAEV KQR+Q GQ ++ A +I K +G GL+VGG L+REIPFNA+ F Y LK V T + + A+LGA ++ +A++ TQP+DTVKT M
Sbjct: 252 LFDGLLPMLLIAGPANAAFFVTYDYLGALATALGAPP-------KGHLF----IELAASLLASLPSNLIRIPAEVTKQRVQAGQAP-KAVVAAATILKTEGPLGLYVGGGAHLLREIPFNAVQFLAYRNLKDVLVATQGGTPASVSAKAILGAVAAGLASLCTQPLDTVKTAQM 413
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A7S4DKU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU3_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 5.310e-22 Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 1
Query: 205 HLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSSELWEN-----------AVLGAASSAMAAVSTQPVDTVKTRVMTKR 555
HL +S++AT+PSN +K PAEVVKQR QV + S ++A +G+ G + GG+ QL REIPFNA+ F V+E L T S L +N AV G +S A ++TQP+DTVKTR+MT+R
Sbjct: 6 HLLSSAIATLPSNAIKIPAEVVKQRCQVEPGSNSLVQARSVWTGGEGLWGFYAGGQAQLAREIPFNALQFLVFETL---TKESTLLQNVLPQPLLGYSAAVGGFIASGAACIATQPIDTVKTRLMTQR 130
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A0G4EP17_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EP17_VITBC) HSP 1 Score: 101 bits (251), Expect = 1.620e-21 Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 43 VFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEI----LKVCTGSSE----LWENAVLGAASSAMAAVSTQPVDTVKTRVM 546
+F G + A P +AVFF +D L L + G+ ST + AS+LA++PS LVKTPAEVVKQRLQVGQ +S+EA ++ + V LF G + QL+RE+PFNA+ + YE L V G LW+ A++G ++ +A+V T P+DTVKT M
Sbjct: 605 LFDGLLPAILVATPASAVFFGAFDLLQPL--------------LAKGVPSTTAVYFLASALASLPSVLVKTPAEVVKQRLQVGQGGANSIEAARALIQQGRVMTLFSGYQAQLLRELPFNALQVSFYERFRQDLAVLEGLDNDILPLWQTALIGFTAAGLASVLTHPLDTVKTLQM 766
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A6M8YHB6_STABO (Diphthamide biosynthesis protein 4 n=1 Tax=Starmerella bombicola TaxID=75736 RepID=A0A6M8YHB6_STABO) HSP 1 Score: 94.0 bits (232), Expect = 5.940e-19 Identity = 63/176 (35.80%), Postives = 100/176 (56.82%), Query Frame = 1
Query: 40 GVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGS--SLEALLSIAKADG-VGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSSEL-WENAVLGAASSAMAAVSTQPVDTVKTRVMTKR 555
GV+ G + + + P A FF+ Y+ L + S H+AA+S+ V + ++ P+EV+KQR+Q GQ + S +L+A+LS +G V GL+ G L+REIPF AI F +YE LKV TG+++ + +A+ G+ + A+AA T P+D +KTR+M +R
Sbjct: 932 GVYSGVGSTIWASAPGAAAFFVVYEQLKT--------------NFKSRQWSDPAAHMAAASIGEVAACTIRVPSEVIKQRVQTGQHSRSFQALKAILSNHSGEGIVRGLYRGYGTTLMREIPFTAIQFPLYERLKVLTGANDKPYRSALCGSIAGALAAAVTTPLDVIKTRIMLQR 1093
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A0G4IM88_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IM88_PLABS) HSP 1 Score: 91.3 bits (225), Expect = 6.640e-19 Identity = 59/175 (33.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 46 FKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSSE------LWENAVLGAASSAMAAVSTQPVDTVKTRVMTK 552
+ G ++ +A + P+ AVFF YD ++ P AL + ++S+A V + V+ P EVVKQ+LQ G + S++E + SI + DGV GL+ G ++RE+PF+A+ F ++E LKV + E E+ +GA + +++A +T P+D VKTR+MT+
Sbjct: 61 YSGLASAMAGSFPSAAVFFAVYDTCRNKSYAMVAPQYH------------ALASMGSASIANVAACAVRVPFEVVKQQLQAGMHS-STVECVKSIVRRDGVAGLYRGYMSTVLREVPFDALQFALWETLKVQYSNMEGGRTLTPLESGAMGAIAGSISAAATNPLDVVKTRLMTQ 222
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A1X6NJF7_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJF7_PORUM) HSP 1 Score: 90.1 bits (222), Expect = 3.620e-18 Identity = 61/192 (31.77%), Postives = 100/192 (52.08%), Query Frame = 1
Query: 16 IERPASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCTGSS------------ELWENAVLGAASSAMAAVSTQPVDTVKTRVMTKR 555
+ R A G++ G + + + P A FF YDAL + + P G G + + H+ A++ V S+ V+ P EVVKQRLQ G +S +A+ S+ + G G + G ++RE+PF+A+ F +YE LK +S + W+ + G+A+ A++A T P+D VKTR+MT++
Sbjct: 79 VARSALLRGLYAGIAPAVIASAPAAAAFFGTYDALKRVLADSI-PDGHGR--------AAPVAHMLAAAGGDVASSTVRAPFEVVKQRLQAGLHA-TSADAVRSVWRTSGARGFYAGYGSLVLRELPFDALQFPLYEALKTRWAASRARAGYPNEGRLQTWQTSACGSAAGAVSAAVTTPLDVVKTRMMTQK 260
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Match: A0A2V3IGN9_9FLOR (Putative S-adenosylmethionine carrier 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGN9_9FLOR) HSP 1 Score: 89.0 bits (219), Expect = 6.950e-18 Identity = 62/181 (34.25%), Postives = 92/181 (50.83%), Query Frame = 1
Query: 28 ASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAGEGTGDSSGGLLSTALFHLAASSLATVPSNLVKTPAEVVKQRLQVGQETGSSLEALLSIAKADGVGGLFVGGREQLIREIPFNAIMFTVYEILKVCT------GSSELWENAVLGAASSAMAAVSTQPVDTVKTRVMTK 552
A G++ GF + + P A FF YD + + E L L H+ A++ V + V+ P EVVKQRLQ G +G ++AK +G+GG + G ++RE+PF+AI F +YE LK G E WE +V G+ + A++A T P+D VKTR+MT+
Sbjct: 61 ALLTGLYAGFGPAVVASAPAAAAFFGVYDYVKRV-------LEEFASRDKARLAP--LCHVVAAAAGDVAGSTVRAPFEVVKQRLQSGLYSGVGAAVRGTLAK-EGLGGFYTGYGSLVLRELPFDAIQFPLYEYLKTVAMRRKRGGQLETWETSVCGSIAGAISAALTTPLDVVKTRLMTQ 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95022.16914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig95022.16914.1 >prot_H-elongata_contig95022.16914.1 ID=prot_H-elongata_contig95022.16914.1|Name=mRNA_H-elongata_contig95022.16914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp MRRLIERPASFDGVFKGFSAFLAQAGPTNAVFFLFYDALNALGGTVLLPAback to top mRNA from alignment at H-elongata_contig95022:402..2271- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig95022.16914.1 ID=mRNA_H-elongata_contig95022.16914.1|Name=mRNA_H-elongata_contig95022.16914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1870bp|location=Sequence derived from alignment at H-elongata_contig95022:402..2271- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig95022:402..2271- >mRNA_H-elongata_contig95022.16914.1 ID=mRNA_H-elongata_contig95022.16914.1|Name=mRNA_H-elongata_contig95022.16914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig95022:402..2271- (Himanthalia elongata Himel1 dioecious)back to top |