mRNA_H-elongata_contig95008.16912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95008.16912.1
Unique NamemRNA_H-elongata_contig95008.16912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95008.16912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95008contigH-elongata_contig95008:317..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.1280115-CDS-H-elongata_contig95008:316..4511622931345.1280115-CDS-H-elongata_contig95008:316..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95008 317..451 -
1691679798.6430395-CDS-H-elongata_contig95008:316..4511691679798.6430395-CDS-H-elongata_contig95008:316..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95008 317..451 -
1622931345.1435237-CDS-H-elongata_contig95008:762..8671622931345.1435237-CDS-H-elongata_contig95008:762..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95008 763..867 -
1691679798.6529503-CDS-H-elongata_contig95008:762..8671691679798.6529503-CDS-H-elongata_contig95008:762..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95008 763..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95008.16912.1prot_H-elongata_contig95008.16912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95008 317..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95008.16912.1

>prot_H-elongata_contig95008.16912.1 ID=prot_H-elongata_contig95008.16912.1|Name=mRNA_H-elongata_contig95008.16912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
GSRFEDNYGRLGAAVLCNGGRLEDSVFVGGDSQGEEQGNGGVRSVGGADG
LTVNNCSFVNVSGASFDSVAHGSALQVSH*
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mRNA from alignment at H-elongata_contig95008:317..867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95008.16912.1 ID=mRNA_H-elongata_contig95008.16912.1|Name=mRNA_H-elongata_contig95008.16912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig95008:317..867- (Himanthalia elongata Himel1 dioecious)
GGGAGCAGGTTCGAGGACAACTACGGGCGCCTCGGGGCGGCGGTGCTGTG
CAACGGGGGAAGATTGGAGGATAGCGTATTCGTCGGCGGGGACAGCCAGG
GAGAGGTGGGCAAAGAAGAAAGAAACCTCCCGCTTTTCTTGTTTCCATTT
TTTTCCTCTTTTATGTCCTCACTACCGATTCATCCCCTGCTGGCGTATGG
CATATGGTTTTTTGTCTCCATCCCCCCTCTCGTGAAATGTCTGTTTCTTC
CTCCGTCTCTTCTTTCTCGTCTCTTTTTGCCTGTTTCGATTTTTTTTATT
CTCTTGTTGTCGTTGCCTAATATGAGTTTCCTCTTTTTTTTTAAAAAATT
GTTCACACAAAAAATAATATTTCTTTCTCGCTTCTGTCCCTATTCCCGAA
CCCGAAACCCCTCCAGGAGCAAGGAAACGGAGGCGTGAGGAGTGTTGGGG
GCGCGGACGGGCTGACGGTCAACAACTGCTCCTTTGTTAACGTCAGCGGC
GCTTCGTTCGATTCCGTTGCTCATGGGTCGGCACTCCAGGTGAGCCATTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig95008:317..867-

>mRNA_H-elongata_contig95008.16912.1 ID=mRNA_H-elongata_contig95008.16912.1|Name=mRNA_H-elongata_contig95008.16912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig95008:317..867- (Himanthalia elongata Himel1 dioecious)
GGGAGCAGGTTCGAGGACAACTACGGGCGCCTCGGGGCGGCGGTGCTGTG
CAACGGGGGAAGATTGGAGGATAGCGTATTCGTCGGCGGGGACAGCCAGG
GAGAGGGGAGCAGGTTCGAGGACAACTACGGGCGCCTCGGGGCGGCGGTG
CTGTGCAACGGGGGAAGATTGGAGGATAGCGTATTCGTCGGCGGGGACAG
CCAGGGAGAGGAGCAAGGAAACGGAGGCGTGAGGAGTGTTGGGGGCGCGG
ACGGGCTGACGGTCAACAACTGCTCCTTTGTTAACGTCAGCGGCGCTTCG
TTCGATTCCGTTGCTCATGGGTCGGCACTCCAGGTGAGCCATTGAGAGCA
AGGAAACGGAGGCGTGAGGAGTGTTGGGGGCGCGGACGGGCTGACGGTCA
ACAACTGCTCCTTTGTTAACGTCAGCGGCGCTTCGTTCGATTCCGTTGCT
CATGGGTCGGCACTCCAGGTGAGCCATTGA
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