mRNA_H-elongata_contig12210.1691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12210.1691.1
Unique NamemRNA_H-elongata_contig12210.1691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12210.1691.1 vs. uniprot
Match: D8LHN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN0_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.090e-102
Identity = 163/208 (78.37%), Postives = 182/208 (87.50%), Query Frame = 1 
Query:    1 MLEGVAVPETLVLDRYRLVVIAAGAEQAAYTASLVAFARQALAAARVQFARKDEDRVRKALMVLFETEDVTSADICAQVAEMTRLIAVAAERALPYDQLSMLSARSRNVLTTGDCPVYKLFLRRTLALLRHTLVEGGLPEDRFEEALRKAGLLDYKDFILDRVVRPLMVVQRHSEAVFSTFYNEIIPLALKTT-------HAKTLEVE 603
            MLEGVAVPETL+LDRYRLVVIAA AEQAAYTASLVAFARQ L A R+  AR DE+RVR ALMVLFETEDVTSADICAQVAEMTR++AV A + LP +QLS+LSARSRNVLTTGDCPVYK+FLRRTL LLR TLVEGG+ E+RF EALRKAGLLDYKDF+L RVVRPL+V++RH+EAVF+TFYNEIIPLALKTT       HA+ L V+
Sbjct:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLGLLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD 208
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BLAST of mRNA_H-elongata_contig12210.1691.1 vs. uniprot
Match: A0A6H5K7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E8_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 8.980e-92
Identity = 161/208 (77.40%), Postives = 182/208 (87.50%), Query Frame = 1 
Query:    1 MLEGVAVPETLVLDRYRLVVIAAGAEQAAYTASLVAFARQALAAARVQFARKDEDRVRKALMVLFETEDVTSADICAQVAEMTRLIAVAAERALPYDQLSMLSARSRNVLTTGDCPVYKLFLRRTLALLRHTLVEGGLPEDRFEEALRKAGLLDYKDFILDRVVRPLMVVQRHSEAVFSTFYNEIIPLALKTT-------HAKTLEVE 603
            MLEGVAVPETL+LDRYRLVVIAA AEQAAYTASLVAFARQ L A R+  AR DE+R+R ALMVLFETEDVTSADICAQVAEMTR+++V A + LP +QLS+LSARSRNVLTTGDCPVYK+FLRRTLALLR TLVEGG+ E+RF EALRKAGLLDYKDF+L RVVRPL+V++RH+EAVF+TFYNEIIPLAL TT       HA+ L V+
Sbjct: 1105 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERIRDALMVLFETEDVTSADICAQVAEMTRVVSVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALNTTTPQAMGAHARALNVD 1312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12210.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN0_ECTSI1.090e-10278.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7E8_9PHAE8.980e-9277.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12210contigH-elongata_contig12210:376..2043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionT-complex 11
Ec32 orthologEc-26_003730.1
Exons3
Model size606
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12210.1691.1prot_H-elongata_contig12210.1691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12210 376..2043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.8033855-CDS-H-elongata_contig12210:375..5341622929718.8033855-CDS-H-elongata_contig12210:375..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 376..534 -
1691679131.2287736-CDS-H-elongata_contig12210:375..5341691679131.2287736-CDS-H-elongata_contig12210:375..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 376..534 -
1622929718.8193858-CDS-H-elongata_contig12210:1227..14401622929718.8193858-CDS-H-elongata_contig12210:1227..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 1228..1440 -
1691679131.2369785-CDS-H-elongata_contig12210:1227..14401691679131.2369785-CDS-H-elongata_contig12210:1227..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 1228..1440 -
1622929718.8360248-CDS-H-elongata_contig12210:1809..20431622929718.8360248-CDS-H-elongata_contig12210:1809..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 1810..2043 -
1691679131.2458537-CDS-H-elongata_contig12210:1809..20431691679131.2458537-CDS-H-elongata_contig12210:1809..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12210 1810..2043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12210.1691.1

>prot_H-elongata_contig12210.1691.1 ID=prot_H-elongata_contig12210.1691.1|Name=mRNA_H-elongata_contig12210.1691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MLEGVAVPETLVLDRYRLVVIAAGAEQAAYTASLVAFARQALAAARVQFA
RKDEDRVRKALMVLFETEDVTSADICAQVAEMTRLIAVAAERALPYDQLS
MLSARSRNVLTTGDCPVYKLFLRRTLALLRHTLVEGGLPEDRFEEALRKA
GLLDYKDFILDRVVRPLMVVQRHSEAVFSTFYNEIIPLALKTTHAKTLEV
E*
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mRNA from alignment at H-elongata_contig12210:376..2043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12210.1691.1 ID=mRNA_H-elongata_contig12210.1691.1|Name=mRNA_H-elongata_contig12210.1691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1668bp|location=Sequence derived from alignment at H-elongata_contig12210:376..2043- (Himanthalia elongata Himel1 dioecious)
ATGCTGGAAGGCGTCGCCGTGCCCGAAACACTGGTGCTTGACCGTTATCG
CCTGGTGGTGATCGCGGCCGGGGCGGAGCAGGCGGCGTATACGGCTTCTC
TCGTGGCGTTTGCACGGCAAGCGCTCGCCGCGGCGCGGGTGCAATTCGCG
CGCAAGGACGAGGACCGCGTGCGGAAGGCACTTATGGTGCTGTTTGAGAC
GGAGGACGTCACGAGCGCAGACATCTGCGCGCAGGTGCAGTGGTGATGAT
AACGGCGAGGGGGCAAGCGCGTGCACGTGTGTTCGCTTTCGTGTGCGTGC
GCCTCTCCATGGCCTCCCCTATGCAGCGACATACTGGTCTTGTCCTCCAG
CACGCCCAGTCAAGCACATGGCATATACCCTCCCTCCTTCAACAGATGGA
TCACGCATGTGTTTAATTGGGACGAAGCTCGTTTTGCGTAGCGGTAATTC
CAGCTGATTCGTTTGGGCGACCATTTTTTTTGTCATGTTTGCCAAAACCG
ACTTGCGCCCTCTTCCTCATTGCCTCACGCGTCGGCTTTTCCCGTTTCCT
TCTGCCCCCGGGGGTCGTCGATTTTGTCGGTCTCTTTTTCTTCTCTCTTC
AAGGTGGCGGAAATGACGCGATTGATCGCCGTTGCCGCGGAAAGAGCGCT
CCCATACGACCAGCTCTCCATGCTCTCGGCGCGCTCCCGCAACGTCTTGA
CCACCGGCGACTGCCCCGTCTACAAGCTCTTCCTCCGCAGGACACTGGCG
CTCCTTCGACATACACTGGTCGAGGGTGGCTTACCCGAGGATCGCTTCGA
AGAAGCGCTGCGAAAGGTAGGCACGAACCCGAGAGATTTCCAATATATCG
ATTACATTACAATGTATAGATTGTAGACTATACAAAATATATCGATGTAC
CCCCCAAAATATTAGAAGTGGTCGGTCGACGAGCTCTGCCGCAAAATTGG
TTTGGCGGAATATCGAAGTTTTTCGTCTTGTTTTATCTCTATTGCGTGAC
ACGGGGTCGCATACCAAAATAAGATGCGTATTGAGGGTGCCGCCAACCGT
CGGACATCTACGGCCGGGAGGGTCTCGGCGGTGTAATTTATACCCGTGCC
TGATTAAAACACTTAATATAAATTCCGGTCGCGTATTGGTGACCCGGTTT
TTTACTTCGCTGGCTGACTTTTTATGCATAAATTAAAAGCTTCTCACAGC
TCACGTTTGAGATGTGATACCCCCCCCCCCAAAATGAGGCACAAGCGTGA
CGTGACGTCACCCTCAATCCTCCGACCGGCAACGATAGAACACGAACGAT
TTGGATGTGATACATCGCCCCCCCAACTGGTCCCGTTCCGTTGGTCCCCA
CGCTACCATTCCGTGTGGAATATTCACACAAAATATAGGATTTTACCCCC
ACGATCCATTCATCCATTCATCCATCCACACCAAAGCTCCTTCCAATGTT
CCCTGCTTCTTCCCCACCCCCTCCCACGCACGGAACGAACTGCGCGGTGC
ACCGAAAAGGCGGGACTATTGGACTACAAGGACTTTATCCTTGACCGCGT
CGTGCGACCGCTCATGGTCGTACAGCGACACAGCGAGGCGGTCTTTTCCA
CGTTCTACAACGAGATCATACCGCTCGCCTTAAAAACGACGCACGCGAAG
ACTCTCGAGGTCGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig12210:376..2043-

>mRNA_H-elongata_contig12210.1691.1 ID=mRNA_H-elongata_contig12210.1691.1|Name=mRNA_H-elongata_contig12210.1691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig12210:376..2043- (Himanthalia elongata Himel1 dioecious)
ATGCTGGAAGGCGTCGCCGTGCCCGAAACACTGGTGCTTGACCGTTATCG
CCTGGTGGTGATCGCGGCCGGGGCGGAGCAGGCGGCGTATACGGCTTCTC
TCGTGGCGTTTGCACGGCAAGCGCTCGCCGCGGCGCGGGTGCAATTCGCG
CGCAAGGACGAGGACCGCGTGCGGAAGGCACTTATGGTGCTGTTTGAGAC
GGAGGACGTCACGAGCGCAGACATCTGCGCGCAGATGCTGGAAGGCGTCG
CCGTGCCCGAAACACTGGTGCTTGACCGTTATCGCCTGGTGGTGATCGCG
GCCGGGGCGGAGCAGGCGGCGTATACGGCTTCTCTCGTGGCGTTTGCACG
GCAAGCGCTCGCCGCGGCGCGGGTGCAATTCGCGCGCAAGGACGAGGACC
GCGTGCGGAAGGCACTTATGGTGCTGTTTGAGACGGAGGACGTCACGAGC
GCAGACATCTGCGCGCAGGTGGCGGAAATGACGCGATTGATCGCCGTTGC
CGCGGAAAGAGCGCTCCCATACGACCAGCTCTCCATGCTCTCGGCGCGCT
CCCGCAACGTCTTGACCACCGGCGACTGCCCCGTCTACAAGCTCTTCCTC
CGCAGGACACTGGCGCTCCTTCGACATACACTGGTCGAGGGTGGCTTACC
CGAGGATCGCTTCGAAGAAGCGCTGCGAAAGGTGGCGGAAATGACGCGAT
TGATCGCCGTTGCCGCGGAAAGAGCGCTCCCATACGACCAGCTCTCCATG
CTCTCGGCGCGCTCCCGCAACGTCTTGACCACCGGCGACTGCCCCGTCTA
CAAGCTCTTCCTCCGCAGGACACTGGCGCTCCTTCGACATACACTGGTCG
AGGGTGGCTTACCCGAGGATCGCTTCGAAGAAGCGCTGCGAAAGGCGGGA
CTATTGGACTACAAGGACTTTATCCTTGACCGCGTCGTGCGACCGCTCAT
GGTCGTACAGCGACACAGCGAGGCGGTCTTTTCCACGTTCTACAACGAGA
TCATACCGCTCGCCTTAAAAACGACGCACGCGAAGACTCTCGAGGTCGAA
TAAGCGGGACTATTGGACTACAAGGACTTTATCCTTGACCGCGTCGTGCG
ACCGCTCATGGTCGTACAGCGACACAGCGAGGCGGTCTTTTCCACGTTCT
ACAACGAGATCATACCGCTCGCCTTAAAAACGACGCACGCGAAGACTCTC
GAGGTCGAATAA
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