mRNA_H-elongata_contig94996.16910.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: D7FHI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI1_ECTSI) HSP 1 Score: 200 bits (508), Expect = 7.540e-60 Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1
Query: 1 QILDVETGRLLARLWDARY-PLYPRPNVAFNATDELVVTDGALWDPRRGARVHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTYR 336
Q+LDVETG +LARLWDAR PLYP PNV FNATD+LVVTDGALWDPRRG RV+QFDKLG G G GLFHPNGNEV+VDEGVWDLRTHRLLRTL CQ+G +MKP PGG+VLYTY+
Sbjct: 159 QVLDVETGSVLARLWDARSRPLYPLPNVGFNATDDLVVTDGALWDPRRGLRVYQFDKLGGGGGFGLFHPNGNEVVVDEGVWDLRTHRLLRTLPCQDGTVMKPDPGGDVLYTYK 271
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE) HSP 1 Score: 199 bits (507), Expect = 4.100e-57 Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = 1
Query: 1 QILDVETGRLLARLWDARY-PLYPRPNVAFNATDELVVTDGALWDPRRGARVHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTYR 336
Q+LDVETG +LARLWDAR PLYP PN+ FNATD+LVVTDGALWDPRRG RV+QFDKLG G G GLFHPNGNEV+VDEGVWDLRTHRLLRTL CQ+G +MKP PGG+VLYTY+
Sbjct: 2056 QVLDVETGSVLARLWDARSRPLYPLPNIGFNATDDLVVTDGALWDPRRGLRVYQFDKLGGGGGFGLFHPNGNEVVVDEGVWDLRTHRLLRTLPCQDGTVMKPDPGGDVLYTYK 2168
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: J9K6N6_ACYPI (LisH domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K6N6_ACYPI) HSP 1 Score: 98.2 bits (243), Expect = 1.570e-21 Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDARYPLYPRPNVAFNATDELVVTDGALWDPRRGARVHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
I D+E+ + + +L LY R AF+AT+ELV++DG LWD G +H+FDKL C G+FHPNG E++ ++ VWD+RT +LLRT+ + +K S G+ +Y Y
Sbjct: 1125 IYDLESRKSILKLIPKHSNLYSRNRAAFDATNELVLSDGVLWDAIAGKEIHKFDKLNE-CVSGIFHPNGLEIISNKEVWDMRTFQLLRTVPSLDQCNVKFSKSGDGMYLY 1233
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A3M6VCW5_9STRA (LisH domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW5_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.020e-20 Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDA-RYPLYP-RPNVAFNATDELVVTDGALWDPRRGAR-VHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
+LD+ TG +L L DA R Y N F+ D ++TDG LWD R R +++FDKL S G G FHPNGNEV+V+ VWDLRT+RLLR + + +K +P G VL+ Y
Sbjct: 1360 VLDIATGNVLCNLQDAMRSNGYGVETNCCFSPCDGTILTDGMLWDARIPTRGLYKFDKL-SNVGCGFFHPNGNEVIVNSAVWDLRTYRLLRMVPALDKCSIKFNPSGSVLFAY 1471
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A662Y0Y0_9STRA (LisH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0Y0_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.030e-20 Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDA-RYPLY-PRPNVAFNATDELVVTDGALWDPRRGAR-VHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
+LD+ TG +L L D+ R Y N F+ D ++TDG LWD R R +++FDKL S G+G FHPNGNEV+V+ VWDLRT+RLLR + + +K SP G VL+ Y
Sbjct: 1371 MLDIATGDVLCDLKDSMRSNDYGTETNCCFSPCDGTILTDGMLWDARIPTRALYKFDKL-SNVGYGFFHPNGNEVIVNSAVWDLRTYRLLRMVPAMDKCNIKFSPSGSVLFAY 1482
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A0D2WKX1_CAPO3 (LisH domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKX1_CAPO3) HSP 1 Score: 95.9 bits (237), Expect = 1.030e-20 Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 1 QILDVETGRLLARLWDARYPLYPRPNVAFNATDELVVTDGALWDPRRGARVHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLY 327
+I ETG+++ L DA Y R FNATD+LV+ DG LWD R+ ++H+FDK + G FHPNGNE+L++ +WD+RT +LLRT + A + S +V++
Sbjct: 1577 RIYSAETGQVILTLSDAASNRYERNVACFNATDDLVLHDGVLWDARQARKIHKFDKFNN-YGLSRFHPNGNEILINSEIWDVRTFKLLRTCPMLDRASVIFSSTSDVIF 1684
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: J9JR27_ACYPI (LisH domain-containing protein n=17 Tax=Aphidinae TaxID=133076 RepID=J9JR27_ACYPI) HSP 1 Score: 95.5 bits (236), Expect = 1.390e-20 Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDARYPLYPRPNVAFNATDELVVTDGALWDPRRGARVHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
I D+ET + + L Y R AF+AT+ELV++DG LWD G +H+FDKL C G+FHPNG E++ + VWD+RT +LLRT+ + + S GE +Y Y
Sbjct: 1130 IYDLETSKRILTLVPKHSNQYSRNRAAFDATNELVLSDGVLWDAIAGKEIHKFDKLNQ-CVSGIFHPNGLEIISNTEVWDMRTFQLLRTVSSLDQCNVTFSKSGEGMYLY 1238
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A6A4G491_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G491_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.670e-20 Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDA-RYPLY-PRPNVAFNATDELVVTDGALWDPRRGAR-VHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
+LD+ TG +L L DA R Y N F+ D ++TDG LWD R R +++FDKL S G G FHPNGNEV+V+ VWDLRT+RLLR + + +K +P G VL+ Y
Sbjct: 124 VLDIATGDVLCDLKDAMRSNDYGAETNCCFSPCDGTILTDGMLWDARIPTRALYKFDKL-SNVGCGFFHPNGNEVIVNSAVWDLRTYRLLRMVPALDKCTIKFNPSGSVLFAY 235
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A6A3F5T6_9STRA (LisH domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F5T6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.550e-20 Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDA-RYPLY-PRPNVAFNATDELVVTDGALWDPRRGAR-VHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
+LD+ TG +L L DA R Y N F+ D ++TDG LWD R R +++FDKL S G G FHPNGNEV+V+ VWDLRT+RLLR + + +K +P G VL+ Y
Sbjct: 702 VLDIATGDVLCDLKDAMRSNDYGAETNCCFSPCDGTILTDGMLWDARIPTRALYKFDKL-SNVGCGFFHPNGNEVIVNSAVWDLRTYRLLRMVPALDKCTIKFNPSGSVLFAY 813
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Match: A0A6A3N5G8_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N5G8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.590e-20 Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 ILDVETGRLLARLWDA-RYPLY-PRPNVAFNATDELVVTDGALWDPRRGAR-VHQFDKLGSGCGHGLFHPNGNEVLVDEGVWDLRTHRLLRTLLCQEGALMKPSPGGEVLYTY 333
+LD+ TG +L L DA R Y N F+ D ++TDG LWD R R +++FDKL S G G FHPNGNEV+V+ VWDLRT+RLLR + + +K +P G VL+ Y
Sbjct: 1073 VLDIATGDVLCDLKDAMRSNDYGAETNCCFSPCDGTILTDGMLWDARIPTRALYKFDKL-SNVGCGFFHPNGNEVIVNSAVWDLRTYRLLRMVPALDKCTIKFNPSGSVLFAY 1184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94996.16910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94996.16910.1 >prot_H-elongata_contig94996.16910.1 ID=prot_H-elongata_contig94996.16910.1|Name=mRNA_H-elongata_contig94996.16910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp QILDVETGRLLARLWDARYPLYPRPNVAFNATDELVVTDGALWDPRRGARback to top mRNA from alignment at H-elongata_contig94996:419..1847- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94996.16910.1 ID=mRNA_H-elongata_contig94996.16910.1|Name=mRNA_H-elongata_contig94996.16910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1429bp|location=Sequence derived from alignment at H-elongata_contig94996:419..1847- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94996:419..1847- >mRNA_H-elongata_contig94996.16910.1 ID=mRNA_H-elongata_contig94996.16910.1|Name=mRNA_H-elongata_contig94996.16910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig94996:419..1847- (Himanthalia elongata Himel1 dioecious)back to top |