mRNA_H-elongata_contig122096.1690.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI) HSP 1 Score: 252 bits (644), Expect = 1.320e-74 Identity = 121/164 (73.78%), Postives = 142/164 (86.59%), Query Frame = 1
Query: 1 LLRLAEAAFKQSIKEDPSLSDAWNGLGA-VSRDPLVRQHCWVRSVQLGHNPSAWANLGVFYVRWDLDGQAYESFGGLQAVTDHPVMWIGLGLLKEKEACQSAVTTAKRKKLLSQATDAHYASLETGQHAEGLLGLGTNAGRTHSQADGLVALKQHLDLSPCSAQ 489
L R AE AF++S++ DP+ S+AWNGLGA +S PLV+QHCWVRSVQL HNPSAWANLG+ YVRW +D QAYESFGGLQAVTDHP MW+GLGLLKEKEACQ V +KR++LLSQA+DA+Y+SLETGQH +GLLGLGT AG+THSQ D LVAL+QHLDL+P SAQ
Sbjct: 965 LTRSAEEAFRRSVEADPAYSEAWNGLGATMSGRPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQAYESFGGLQAVTDHPTMWVGLGLLKEKEACQPGVAGSKRRRLLSQASDAYYSSLETGQHVDGLLGLGTTAGQTHSQDDALVALQQHLDLNPSSAQ 1128
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE) HSP 1 Score: 248 bits (634), Expect = 2.430e-73 Identity = 121/168 (72.02%), Postives = 142/168 (84.52%), Query Frame = 1
Query: 1 LLRLAEAAFKQSIKEDPSLSDAWNGLGA-VSRDPLVRQHCWVRSVQLGHNPSAWANLGVFYVRWDLDGQA----YESFGGLQAVTDHPVMWIGLGLLKEKEACQSAVTTAKRKKLLSQATDAHYASLETGQHAEGLLGLGTNAGRTHSQADGLVALKQHLDLSPCSAQ 489
L R AE AF++S++ DP+ S+AWNGLGA +S+ PLV+QHCWVRSVQL HNPSAWANLG+ YVRW +D QA YESFGGLQAVTDHP MW+GLGLLKEKEACQ V KR++LLSQA+DA+Y+SLETGQH +GLLGLGT AG+THSQ D LVAL+QHLDL+P SAQ
Sbjct: 444 LTRSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQAIYTAYESFGGLQAVTDHPTMWVGLGLLKEKEACQPGVAATKRRRLLSQASDAYYSSLETGQHVDGLLGLGTTAGQTHSQDDALVALQQHLDLNPTSAQ 611
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A836CP95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP95_9STRA) HSP 1 Score: 144 bits (364), Expect = 6.130e-37 Identity = 80/169 (47.34%), Postives = 93/169 (55.03%), Query Frame = 1
Query: 1 LLRLAEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNPSAWANLGVFYVRWDLDGQAYESFGGLQAVTDHPVMWIGLGLLKEKEACQS----------AVTTAKRKKLLSQATDAHYASLETGQHAEGLLGLGTNAGRTHSQADGLVALKQHLDLSP 477
L + A + +++ D SDAW LGA RDPL RQHC R+ QL HNPSAWA L Y W G+AYE+ G LQAV DHP MW+ LG L+E EA ++ A TA LSQA DA YASLE EGL GL A THS D LVA D +P
Sbjct: 897 LTQRAAEELRAALRHDALHSDAWTALGAAERDPLARQHCLARAAQLDHNPSAWACLAALYAAWRRSGEAYEALGALQAVVDHPAMWVLLGRLREDEAAEAXXXXXXXXXXAPLTA-----LSQAADAFYASLEAAPLLEGLAGLARTAALTHSLGDALVAAALRCDAAP 1060
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: F0W334_9STRA (Uncharacterized protein AlNc14C12G1412 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W334_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 6.440e-15 Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 25 FKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNPSAWANLGVFYVRWDLDGQAYESFGGLQAVT-DHPVMWIGLGLLKEKEACQS 300
F +++K DP + AWNG+G V + +V+Q CW+R++Q+ +AWANLG FY A E+F LQ V DH MW+G GLL E S
Sbjct: 882 FVKALKIDPKHAFAWNGIGIVHGNAIVKQFCWIRAIQIAFLDAAWANLGFFYANAQQTFLAKEAFLKLQDVNPDHVGMWLGYGLLHRLEKLDS 974
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A024FY09_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024FY09_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 3.580e-11 Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1
Query: 25 FKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNPSAWANLGVFYVRWDLDGQ-------AYESFGGLQAV-TDHPVMWIGLGLLKEKEACQSA 303
F +S++ DP + AWNG+G V + +V+Q CW+R++Q +AWANLG Y + Q A E F LQ V +DH MW+G G L + E A
Sbjct: 883 FIRSLEMDPKNAFAWNGIGIVHGNLIVKQFCWIRAIQCTFLNAAWANLGFLYAHTLYNRQKQTLLLLAKEVFLKLQDVNSDHTGMWLGYGFLHQLEKSDQA 983
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A6A5BHX9_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BHX9_NAEFO) HSP 1 Score: 64.3 bits (155), Expect = 6.710e-9 Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 25 FKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGH-NPSAWANLGVFYVRWDLDGQAYESFGGLQAV-TDHPVMWIGLGLLKEKEACQSAVTTAK 318
K+++ +P+ S+ WN LG +S + +VRQHC++R+VQ+ + N AW NLG Y+ A ++F QA+ + V W+GL L+ E + + AK
Sbjct: 934 IKKALTLNPTNSNYWNLLGILSDNHVVRQHCFIRAVQIDNKNYDAWNNLGALYLTKSNLKLARKAFLKAQAIYPESTVAWVGLALINENVPNREGIFRAK 1033
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: E9FQY4_DAPPU (Uncharacterized protein n=4 Tax=Daphnia TaxID=6668 RepID=E9FQY4_DAPPU) HSP 1 Score: 57.0 bits (136), Expect = 2.210e-6 Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 13 AEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNP----SAWANLGVFYVRWDLDGQAYESFGGLQAVTD-HPVMWIGLGLLKEK 285
A AA K++I +P S W+ LG ++ P +RQH ++R+++L N + W +LG Y+ A+E F Q + H WIG G++ E+
Sbjct: 803 ALAAIKKAITLEPKDSSHWDLLGQIAEQPAIRQHAFIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVSAWIGQGIIAEQ 898
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A0P5Y5G9_9CRUS (Putative Tetratricopeptide repeat protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5Y5G9_9CRUS) HSP 1 Score: 56.6 bits (135), Expect = 2.830e-6 Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 13 AEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNP----SAWANLGVFYVRWDLDGQAYESFGGLQAVTD-HPVMWIGLGLLKEK 285
A AA K++I +P S W+ LG V+ +P +RQH ++R+++L N + W +LG Y+ A+E F Q + H WIG G + E+
Sbjct: 393 ALAAIKKAITLEPKDSSHWDLLGLVATEPAIRQHAFIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVAAWIGQGNIAEQ 488
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A0P5XVH7_9CRUS (Tetratricopeptide repeat protein n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5XVH7_9CRUS) HSP 1 Score: 56.6 bits (135), Expect = 2.940e-6 Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 13 AEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNP----SAWANLGVFYVRWDLDGQAYESFGGLQAVTD-HPVMWIGLGLLKEK 285
A AA K++I +P S W+ LG V+ +P +RQH ++R+++L N + W +LG Y+ A+E F Q + H WIG G + E+
Sbjct: 509 ALAAIKKAITLEPKDSSHWDLLGLVATEPAIRQHAFIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVAAWIGQGNIAEQ 604
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Match: A0A165A8Z7_9CRUS (Tetratricopeptide repeat protein 37 n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A165A8Z7_9CRUS) HSP 1 Score: 56.6 bits (135), Expect = 3.000e-6 Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 13 AEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNP----SAWANLGVFYVRWDLDGQAYESFGGLQAVTD-HPVMWIGLGLLKEK 285
A AA K++I +P S W+ LG V+ +P +RQH ++R+++L N + W +LG Y+ A+E F Q + H WIG G + E+
Sbjct: 789 ALAAIKKAITLEPKDSSHWDLLGLVATEPAIRQHAFIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVAAWIGQGNIAEQ 884 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122096.1690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122096.1690.1 >prot_H-elongata_contig122096.1690.1 ID=prot_H-elongata_contig122096.1690.1|Name=mRNA_H-elongata_contig122096.1690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp LLRLAEAAFKQSIKEDPSLSDAWNGLGAVSRDPLVRQHCWVRSVQLGHNPback to top mRNA from alignment at H-elongata_contig122096:468..1780+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122096.1690.1 ID=mRNA_H-elongata_contig122096.1690.1|Name=mRNA_H-elongata_contig122096.1690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1313bp|location=Sequence derived from alignment at H-elongata_contig122096:468..1780+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122096:468..1780+ >mRNA_H-elongata_contig122096.1690.1 ID=mRNA_H-elongata_contig122096.1690.1|Name=mRNA_H-elongata_contig122096.1690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig122096:468..1780+ (Himanthalia elongata Himel1 dioecious)back to top |