mRNA_H-elongata_contig94831.16896.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94831.16896.1
Unique NamemRNA_H-elongata_contig94831.16896.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: A0A6H5K5D8_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.090e-36
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 1
Query:   19 VRLGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            VRLGPRNFLRLWSAILCERRVLLVA+EVRTLS CVHAA+A+LYPFAWQHV+IPLLPT MLEYVSAPMPFVIGVR
Sbjct:  255 VRLGPRNFLRLWSAILCERRVLLVADEVRTLSCCVHAAMAMLYPFAWQHVFIPLLPTDMLEYVSAPMPFVIGVR 328          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: D7FTJ7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ7_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.750e-36
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 1
Query:   19 VRLGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            VRLGPRNFLRLWSAILCERRVLLVA++VRTLS CVHAA+A+LYPFAWQHV+IPLLPT MLEYVSAPMPFVIGVR
Sbjct:  153 VRLGPRNFLRLWSAILCERRVLLVADKVRTLSCCVHAAMAMLYPFAWQHVFIPLLPTDMLEYVSAPMPFVIGVR 226          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: D8M278_BLAHO (UDENN domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M278_BLAHO)

HSP 1 Score: 87.8 bits (216), Expect = 7.030e-20
Identity = 34/73 (46.58%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   22 RLGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            R   ++ + L SA++CE+R++ + +E+ TLS C+HAA+AIL PF+W H++IP++P  +L YV+APMPF++G++
Sbjct:   56 RFDVKSLILLLSALMCEKRIIFIGDELSTLSECIHAAVAILCPFSWHHIFIPIVPASLLSYVTAPMPFLVGIK 128          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: UPI001402BFCC (suppression of tumorigenicity 5 protein-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402BFCC)

HSP 1 Score: 91.7 bits (226), Expect = 8.290e-20
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   25 LGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGV 237
            LGPR  +R ++A+L ERRV+  A+ +  LS C HAALA+LYPFAWQH Y+P+LP PM++ V +P PFV+G+
Sbjct:  752 LGPRTLVRTFAALLLERRVIFTADRLSVLSKCCHAALALLYPFAWQHTYVPVLPAPMVDIVCSPTPFVVGL 822          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: L8GIG9_ACACA (DENN (AEX3) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIG9_ACACA)

HSP 1 Score: 89.0 bits (219), Expect = 7.220e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   25 LGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGV 237
            L P N L  ++++L ERR++ ++E V TLSACV A +AILYPF+WQHV+IP+LP  +L +  APMPFV+GV
Sbjct:  190 LSPDNILAAFASLLVERRIIFISERVSTLSACVQACVAILYPFSWQHVFIPVLPASLLSFCCAPMPFVVGV 260          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: UPI0014026E17 (suppression of tumorigenicity 5 protein-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014026E17)

HSP 1 Score: 89.0 bits (219), Expect = 7.400e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   25 LGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGV 237
            LGPR  LR++S++L ERRV+  A+++ TLS C HAA A+LYPFAWQH Y+P+LP  ML+   +P PF++GV
Sbjct: 1196 LGPRQLLRVFSSLLMERRVIFTADKLSTLSKCGHAAAALLYPFAWQHTYVPVLPASMLDIACSPTPFLMGV 1266          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: Q6DCI3_XENLA (LOC446246 protein (Fragment) n=4 Tax=Xenopus laevis TaxID=8355 RepID=Q6DCI3_XENLA)

HSP 1 Score: 87.8 bits (216), Expect = 1.850e-18
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   43 LRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            L L+S++LCERR+L+ + ++ TL+ACVHA+ A+LYP  WQH+YIP LP  +L+Y SAPMP++IGV 
Sbjct:  182 LHLYSSLLCERRILITSSKLSTLTACVHASAALLYPMYWQHIYIPTLPPHLLDYCSAPMPYLIGVH 247          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: A0A8C4RE84_EPTBU (UDENN domain-containing protein n=3 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4RE84_EPTBU)

HSP 1 Score: 87.8 bits (216), Expect = 1.850e-18
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   25 LGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGV 237
            LG R+ LRL++++L ERRV+L A+++ TLS C HA +A+LYPF WQH YIP+LP  ML+ V AP PF+IG+
Sbjct:  501 LGTRHLLRLFASLLLERRVILTADKLSTLSKCGHAIVALLYPFIWQHTYIPVLPVSMLDIVCAPTPFLIGL 571          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: F6SD79_XENTR (DENN domain-containing protein 1C n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=F6SD79_XENTR)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-18
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   43 LRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            L L+S++LCERR+L+ + ++ TL+ACVHA+ A+LYP  WQH+YIP LP  +L+Y SAPMP++IGV 
Sbjct:  182 LHLYSSLLCERRILITSSKLSTLTACVHASAALLYPMYWQHIYIPTLPPHLLDYCSAPMPYLIGVH 247          
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Match: S4RUT0_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUT0_PETMA)

HSP 1 Score: 84.7 bits (208), Expect = 2.390e-18
Identity = 37/66 (56.06%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   43 LRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQHVYIPLLPTPMLEYVSAPMPFVIGVR 240
            L+L++++L ERR+++ + ++ TLS+C+HA   +LYP +WQHVYIPLLP  +LEY SAPMPF+IGV 
Sbjct:  162 LQLYASLLNERRIIVTSSKISTLSSCIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94831.16896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5D8_9PHAE1.090e-3691.89UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FTJ7_ECTSI3.750e-3690.54UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D8M278_BLAHO7.030e-2046.58UDENN domain-containing protein n=1 Tax=Blastocyst... [more]
UPI001402BFCC8.290e-2056.34suppression of tumorigenicity 5 protein-like n=1 T... [more]
L8GIG9_ACACA7.220e-1956.34DENN (AEX3) domain containing protein n=1 Tax=Acan... [more]
UPI0014026E177.400e-1956.34suppression of tumorigenicity 5 protein-like n=1 T... [more]
Q6DCI3_XENLA1.850e-1857.58LOC446246 protein (Fragment) n=4 Tax=Xenopus laevi... [more]
A0A8C4RE84_EPTBU1.850e-1857.75UDENN domain-containing protein n=3 Tax=Eptatretus... [more]
F6SD79_XENTR1.860e-1857.58DENN domain-containing protein 1C n=2 Tax=Xenopus ... [more]
S4RUT0_PETMA2.390e-1856.06UDENN domain-containing protein n=1 Tax=Petromyzon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94831contigH-elongata_contig94831:1494..1733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.4e-30
Seed eggNOG ortholog2880.D7FTJ7
KEGG koko:K20160,ko:K20161
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.4038875-CDS-H-elongata_contig94831:1493..17211622931343.4038875-CDS-H-elongata_contig94831:1493..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94831 1494..1721 -
1691679797.8536744-CDS-H-elongata_contig94831:1493..17211691679797.8536744-CDS-H-elongata_contig94831:1493..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94831 1494..1721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.4169636-UTR-H-elongata_contig94831:1721..17331622931343.4169636-UTR-H-elongata_contig94831:1721..1733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94831 1722..1733 -
1691679797.8728933-UTR-H-elongata_contig94831:1721..17331691679797.8728933-UTR-H-elongata_contig94831:1721..1733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94831 1722..1733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94831.16896.1prot_H-elongata_contig94831.16896.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94831 1494..1721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94831.16896.1

>prot_H-elongata_contig94831.16896.1 ID=prot_H-elongata_contig94831.16896.1|Name=mRNA_H-elongata_contig94831.16896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MQVRLGPRNFLRLWSAILCERRVLLVAEEVRTLSACVHAALAILYPFAWQ
HVYIPLLPTPMLEYVSAPMPFVIGVR
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mRNA from alignment at H-elongata_contig94831:1494..1733-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94831.16896.1 ID=mRNA_H-elongata_contig94831.16896.1|Name=mRNA_H-elongata_contig94831.16896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig94831:1494..1733- (Himanthalia elongata Himel1 dioecious)
TCTTCACAATCAATGCAGGTGCGACTAGGCCCCCGCAACTTCCTCCGGCT ATGGTCGGCCATCCTCTGCGAAAGGCGGGTACTGCTTGTGGCGGAAGAAG TCCGAACGCTGTCGGCCTGCGTCCACGCCGCCTTGGCCATCCTCTACCCC TTTGCCTGGCAACACGTGTACATCCCTCTCTTGCCGACGCCCATGCTGGA GTACGTCTCCGCTCCCATGCCGTTCGTTATCGGGGTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig94831:1494..1733-

>mRNA_H-elongata_contig94831.16896.1 ID=mRNA_H-elongata_contig94831.16896.1|Name=mRNA_H-elongata_contig94831.16896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig94831:1494..1733- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGCGACTAGGCCCCCGCAACTTCCTCCGGCTATGGTCGGCCAT
CCTCTGCGAAAGGCGGGTACTGCTTGTGGCGGAAGAAGTCCGAACGCTGT
CGGCCTGCGTCCACGCCGCCTTGGCCATCCTCTACCCCTTTGCCTGGCAA
CACGTGTACATCCCTCTCTTGCCGACGCCCATGCTGGAGTACGTCTCCGC
TCCCATGCCGTTCGTTATCGGGGTAAGAATGCAGGTGCGACTAGGCCCCC
GCAACTTCCTCCGGCTATGGTCGGCCATCCTCTGCGAAAGGCGGGTACTG
CTTGTGGCGGAAGAAGTCCGAACGCTGTCGGCCTGCGTCCACGCCGCCTT
GGCCATCCTCTACCCCTTTGCCTGGCAACACGTGTACATCCCTCTCTTGC
CGACGCCCATGCTGGAGTACGTCTCCGCTCCCATGCCGTTCGTTATCGGG
GTAAGA
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