mRNA_H-elongata_contig94830.16895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94830.16895.1
Unique NamemRNA_H-elongata_contig94830.16895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94830.16895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94830contigH-elongata_contig94830:21..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_002850.1
Exons2
Model size789
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94830.16895.1prot_H-elongata_contig94830.16895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94830 21..1201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.3224041-CDS-H-elongata_contig94830:20..2511622931343.3224041-CDS-H-elongata_contig94830:20..251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94830 21..251 +
1691679797.820857-CDS-H-elongata_contig94830:20..2511691679797.820857-CDS-H-elongata_contig94830:20..251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94830 21..251 +
1622931343.341224-CDS-H-elongata_contig94830:982..12011622931343.341224-CDS-H-elongata_contig94830:982..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94830 983..1201 +
1691679797.8316796-CDS-H-elongata_contig94830:982..12011691679797.8316796-CDS-H-elongata_contig94830:982..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94830 983..1201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.3571556-UTR-H-elongata_contig94830:1201..15381622931343.3571556-UTR-H-elongata_contig94830:1201..1538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94830 1202..1538 +
1691679797.841916-UTR-H-elongata_contig94830:1201..15381691679797.841916-UTR-H-elongata_contig94830:1201..1538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94830 1202..1538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94830.16895.1

>prot_H-elongata_contig94830.16895.1 ID=prot_H-elongata_contig94830.16895.1|Name=mRNA_H-elongata_contig94830.16895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
TDRELNFAAEWQGQANRLNSLSPPDRERLEVNLRQALGKKKGNKKGNKRG
GAGGRGTIPVSTKSDRGFGGRVGVGPQVSQGKAAAVAGNVAEDVADPARA
DDSDKSLAAAAAAAATAPSLSDNVAGSPEFAPRDAGSGVHTSGGDPPRA*
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mRNA from alignment at H-elongata_contig94830:21..1538+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94830.16895.1 ID=mRNA_H-elongata_contig94830.16895.1|Name=mRNA_H-elongata_contig94830.16895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1518bp|location=Sequence derived from alignment at H-elongata_contig94830:21..1538+ (Himanthalia elongata Himel1 dioecious)
ACCGATAGGGAGCTGAATTTTGCAGCCGAGTGGCAAGGGCAGGCCAACCG
CCTCAACAGCCTCAGCCCACCCGACCGAGAAAGGCTCGAGGTGAACCTTC
GACAGGCACTCGGCAAGAAGAAGGGAAACAAGAAGGGAAATAAGAGGGGG
GGAGCGGGAGGCAGGGGGACCATCCCCGTCTCGACGAAAAGCGACAGGGG
TTTCGGTGGAAGAGTTGGAGTTGGCCCGCAGGTGGGGTCATGGATAAGGC
TTAGGCTTTGACTTTTAATGCTTTCTTACTTGGAGGCATGGATGATGTAG
CATCGACGCAGCATGGGCGCCAATGCTCGTAGGGGCCAATATTTTTAAGC
AAGTAGTTTGTATACCGGTACGTACGGATGTATAATACTTGCTTATGTGA
AAACGCCTACAGCGGGTTTCCTTTTTTTCCAAGCCATGAAGCTCTGCTGG
CTTATGTGCATTTAAAACGCTGTTAAACACTGGATATATATATATATATA
TATACATATATTACATGTATAGATCCATGACTACGGTGGGTTTCCGTTTG
AAACTCGTGGAACTCCCTGCTGGCTTATTGGCAAAGAAAACGTTGATACA
TGGGGCGTAGAAACCAACGATAAAACGTCGCCAGGGTTCGAAGACTTCGA
AGCGAGGCGTGGGTGGAGTAATGAGGGGGAAATTGATTGGACGTTGATTG
GTTGAATCCTTCCGTTATTCATTTATGGGACGGTATCCCAACATCCGCTA
TCGGGGACATAGTTGATGTATCCCTTGATGGGATGGATTTCTGTTCGGTG
TGTACGCACAATACTTGCCACCATCACTCAGATACATGAGGACGAACATC
CCTCCCCCCTTGAGGAGGGGCTGTTTTGATGTGTGTCCCCCCGCCTACTT
GAACTCATGGATATTTTCACCGCATCCCCCTCTCCCCAATACATCATTTG
ATCACTCGTGAGGTGTCCCAGGGGAAAGCTGCTGCTGTTGCTGGAAATGT
TGCTGAAGACGTCGCTGACCCCGCGAGAGCTGACGATTCCGACAAGAGCC
TCGCAGCAGCCGCAGCCGCTGCCGCCACTGCTCCCTCCCTCTCCGACAAC
GTGGCTGGATCTCCCGAGTTCGCCCCGAGGGACGCAGGATCCGGAGTTCA
CACGAGTGGAGGTGATCCTCCCCGAGCGTGAACCCTTCGGAGAAGGAGTT
GCAGTGCCTGCAGGCGTTGAGTTAGCAAGCGGGGACAAGGGATGAGAGGA
GGGGGGTATTAATACAGATTAGACACCAGTAGGCGACAAGACCCGCTAGA
CCCGAGGCTCTTCCTTGGGCTCGCGATTAAAACAAAAAAATCAGGTTGGA
GGGGGAAGGGTTACTTCTATCAGCGCATGTCGTATTCTAGCAGACATAGA
CCATACATATATCCCAATGCTTGGACGGAGTGATATGATACCGGGTTTTT
TGCAGGTCAGGATGCGTTTTCGACGCGGGAACCGTGTGTATATATCGTTG
GTTAATATTGGACACACA
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Coding sequence (CDS) from alignment at H-elongata_contig94830:21..1538+

>mRNA_H-elongata_contig94830.16895.1 ID=mRNA_H-elongata_contig94830.16895.1|Name=mRNA_H-elongata_contig94830.16895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig94830:21..1538+ (Himanthalia elongata Himel1 dioecious)
ACCGATAGGGAGCTGAATTTTGCAGCCGAGTGGCAAGGGCAGGCCAACCG
CCTCAACAGCCTCAGCCCACCCGACCGAGAAAGGCTCGAGGTGAACCTTC
GACAGGCACTCGGCAAGAAGAAGGGAAACAAGAAGGGAAATAAGAGGGGG
GGAGCGGGAGGCAGGGGGACCATCCCCGTCTCGACGAAAAGCGACAGGGG
TTTCGGTGGAAGAGTTGGAGTTGGCCCGCAGACCGATAGGGAGCTGAATT
TTGCAGCCGAGTGGCAAGGGCAGGCCAACCGCCTCAACAGCCTCAGCCCA
CCCGACCGAGAAAGGCTCGAGGTGAACCTTCGACAGGCACTCGGCAAGAA
GAAGGGAAACAAGAAGGGAAATAAGAGGGGGGGAGCGGGAGGCAGGGGGA
CCATCCCCGTCTCGACGAAAAGCGACAGGGGTTTCGGTGGAAGAGTTGGA
GTTGGCCCGCAGGTGTCCCAGGGGAAAGCTGCTGCTGTTGCTGGAAATGT
TGCTGAAGACGTCGCTGACCCCGCGAGAGCTGACGATTCCGACAAGAGCC
TCGCAGCAGCCGCAGCCGCTGCCGCCACTGCTCCCTCCCTCTCCGACAAC
GTGGCTGGATCTCCCGAGTTCGCCCCGAGGGACGCAGGATCCGGAGTTCA
CACGAGTGGAGGTGATCCTCCCCGAGCGTGAGTGTCCCAGGGGAAAGCTG
CTGCTGTTGCTGGAAATGTTGCTGAAGACGTCGCTGACCCCGCGAGAGCT
GACGATTCCGACAAGAGCCTCGCAGCAGCCGCAGCCGCTGCCGCCACTGC
TCCCTCCCTCTCCGACAACGTGGCTGGATCTCCCGAGTTCGCCCCGAGGG
ACGCAGGATCCGGAGTTCACACGAGTGGAGGTGATCCTCCCCGAGCGTGA
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