prot_H-elongata_contig94766.16890.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94766.16890.1
Unique Nameprot_H-elongata_contig94766.16890.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
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BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.700e-38
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0 
Query:    1 GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIEDLVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNKPRLDEFVILHPRYLMRAIKLIVR 123
            GF+ FR+QVL LAGD K FP SRLPP W K D LVKQ+R +GH I+ + DLV  L       +     G+  ++ EDSRN VVSTL WLNDTSEVVYFNKP LDEFVILHPR+LM AIK +VR
Sbjct: 1191 GFREFREQVLNLAGDGKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLRDGVGGEVSASPAGDG-QSWEDSRNAVVSTLEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVR 1312
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BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.700e-38
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0 
Query:    1 GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIEDLVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNKPRLDEFVILHPRYLMRAIKLIVR 123
            GF+ FR+QVL LAGD K FP SRLPP W K D LVKQ+R +GH I+ + DLV  L       +     G+  ++ EDSRN VVSTL WLNDTSEVVYFNKP LDEFVILHPR+LM AIK +VR
Sbjct: 1162 GFREFREQVLNLAGDAKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLRDGVGGEVPAAPAGDG-QSWEDSRNAVVSTLEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVR 1283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI4.700e-3861.79LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE4.700e-3861.79Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94766contigH-elongata_contig94766:1634..2269 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94766.16890.1mRNA_H-elongata_contig94766.16890.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94766 1634..2269 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94766.16890.1 ID=prot_H-elongata_contig94766.16890.1|Name=mRNA_H-elongata_contig94766.16890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIED
LVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNK
PRLDEFVILHPRYLMRAIKLIVR*
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