mRNA_H-elongata_contig94766.16890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94766.16890.1
Unique NamemRNA_H-elongata_contig94766.16890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.700e-38
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 1 
Query:    1 GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIEDLVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNKPRLDEFVILHPRYLMRAIKLIVR 369
            GF+ FR+QVL LAGD K FP SRLPP W K D LVKQ+R +GH I+ + DLV  L       +     G+  ++ EDSRN VVSTL WLNDTSEVVYFNKP LDEFVILHPR+LM AIK +VR
Sbjct: 1191 GFREFREQVLNLAGDGKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLRDGVGGEVSASPAGDG-QSWEDSRNAVVSTLEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVR 1312
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BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.700e-38
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 1 
Query:    1 GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIEDLVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNKPRLDEFVILHPRYLMRAIKLIVR 369
            GF+ FR+QVL LAGD K FP SRLPP W K D LVKQ+R +GH I+ + DLV  L       +     G+  ++ EDSRN VVSTL WLNDTSEVVYFNKP LDEFVILHPR+LM AIK +VR
Sbjct: 1162 GFREFREQVLNLAGDAKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLRDGVGGEVPAAPAGDG-QSWEDSRNAVVSTLEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVR 1283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94766.16890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI4.700e-3861.79LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE4.700e-3861.79Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94766contigH-elongata_contig94766:1634..2269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue2e-32
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.8096004-CDS-H-elongata_contig94766:1633..17501622931342.8096004-CDS-H-elongata_contig94766:1633..1750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94766 1634..1750 -
1691679797.594572-CDS-H-elongata_contig94766:1633..17501691679797.594572-CDS-H-elongata_contig94766:1633..1750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94766 1634..1750 -
1622931342.8253562-CDS-H-elongata_contig94766:2014..22691622931342.8253562-CDS-H-elongata_contig94766:2014..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94766 2015..2269 -
1691679797.611128-CDS-H-elongata_contig94766:2014..22691691679797.611128-CDS-H-elongata_contig94766:2014..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94766 2015..2269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94766.16890.1prot_H-elongata_contig94766.16890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94766 1634..2269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94766.16890.1

>prot_H-elongata_contig94766.16890.1 ID=prot_H-elongata_contig94766.16890.1|Name=mRNA_H-elongata_contig94766.16890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
GFQAFRQQVLRLAGDRKCFPTSRLPPAWVKVDTLVKQQRSKGHGIMRIED
LVKCLDSSSNCSIIEYCGGERTETLEDSRNIVVSTLNWLNDTSEVVYFNK
PRLDEFVILHPRYLMRAIKLIVR*
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mRNA from alignment at H-elongata_contig94766:1634..2269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94766.16890.1 ID=mRNA_H-elongata_contig94766.16890.1|Name=mRNA_H-elongata_contig94766.16890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig94766:1634..2269- (Himanthalia elongata Himel1 dioecious)
GGCTTCCAAGCCTTTCGTCAGCAAGTTCTGCGGCTGGCCGGAGACCGGAA
GTGCTTCCCCACTTCTCGACTACCTCCTGCGTGGGTAAAGGTGGACACCC
TGGTGAAACAACAACGCTCCAAGGGGCACGGTATCATGAGAATCGAGGAT
CTAGTCAAATGCCTCGACTCCAGTAGCAACTGCAGCATCATCGAATATTG
CGGCGGTGAAAGGACGGAGACCTTGGAGGATTCACGTAACATTGTAGTGT
CTACGGTGAGTAATCTATCAAGATGAATTTTGTTTTGTAAGAATCCGGGG
GATTTGAGTGTTTCCGCTTCCTTTAAAAGCAAGAGTGTTTGCATGTTTAA
TGAATGCTGTTGGGTATTCAGTCCGTCCGATGGTGCCTCGCCAACGCCCG
TTTCGAGGCCGTTGGTTTAAGGGTGCACTCATCACCATTGTTTAGCTGAC
GCGCTCGATGGGGCGGGGCTCCTATGGGTGTTCCAATTTTTTGTTATTGT
TTCCGTTTGAGGGGGATAGCTGAACTGGCTCAACGACACGTCCGAGGTGG
TGTACTTCAATAAGCCACGGCTCGACGAGTTCGTCATCCTGCACCCCCGG
TATCTCATGAGGGCCATCAAGCTCATCGTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig94766:1634..2269-

>mRNA_H-elongata_contig94766.16890.1 ID=mRNA_H-elongata_contig94766.16890.1|Name=mRNA_H-elongata_contig94766.16890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig94766:1634..2269- (Himanthalia elongata Himel1 dioecious)
GGCTTCCAAGCCTTTCGTCAGCAAGTTCTGCGGCTGGCCGGAGACCGGAA
GTGCTTCCCCACTTCTCGACTACCTCCTGCGTGGGTAAAGGTGGACACCC
TGGTGAAACAACAACGCTCCAAGGGGCACGGTATCATGAGAATCGAGGAT
CTAGTCAAATGCCTCGACTCCAGTAGCAACTGCAGCATCATCGAATATTG
CGGCGGTGAAAGGACGGAGACCTTGGAGGATTCACGTAACATTGTAGTGT
CTACGGGCTTCCAAGCCTTTCGTCAGCAAGTTCTGCGGCTGGCCGGAGAC
CGGAAGTGCTTCCCCACTTCTCGACTACCTCCTGCGTGGGTAAAGGTGGA
CACCCTGGTGAAACAACAACGCTCCAAGGGGCACGGTATCATGAGAATCG
AGGATCTAGTCAAATGCCTCGACTCCAGTAGCAACTGCAGCATCATCGAA
TATTGCGGCGGTGAAAGGACGGAGACCTTGGAGGATTCACGTAACATTGT
AGTGTCTACGCTGAACTGGCTCAACGACACGTCCGAGGTGGTGTACTTCA
ATAAGCCACGGCTCGACGAGTTCGTCATCCTGCACCCCCGGTATCTCATG
AGGGCCATCAAGCTCATCGTCAGGTGACTGAACTGGCTCAACGACACGTC
CGAGGTGGTGTACTTCAATAAGCCACGGCTCGACGAGTTCGTCATCCTGC
ACCCCCGGTATCTCATGAGGGCCATCAAGCTCATCGTCAGGTGA
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