mRNA_H-elongata_contig94728.16886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94728.16886.1
Unique NamemRNA_H-elongata_contig94728.16886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 196 bits (498), Expect = 6.760e-62
Identity = 99/122 (81.15%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 MSITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNECDNEQRK 366
            MS++R GSIDPFR AMHDVFDSMERDLMAPSGMSSRF T  FPGSS+AL+SA+P++GV+ G GMNLDFHET+KG+ELSADLPGMKKEDI VDID+ESGVLTVTGER+QERE+K+E DNEQRK
Sbjct:    1 MSLSRAGSIDPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.060e-25
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   46 MHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEG---FGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
            ++DVF S+ER+++AP G++SRFPT      +  +    PT    +G    GM+LDFHET  GFEL ADLPGMKKED+++D+D ESGVLTV+GER+ E+E+K
Sbjct:   20 INDVFGSIEREMLAPWGLASRFPT------TRDMFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEK 114          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-19
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   79 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREK 336
            ++AP G +SRFPT      S++  S++   G +    MNLDFHET  GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ +REK
Sbjct:    1 MLAPWGFASRFPTARDMVPSVS--SSLFRDGSRS-LDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREK 83          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.970e-19
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   52 DVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSA-------------------------------IPTVG---VKEG---FGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
            DVF S+ER+++AP G++SRFPT      S   +                                 +P+V     ++G     MNLDFHET  GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ ERE+K
Sbjct:    7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEK 139          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.810e-18
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   79 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
            ++AP G++ RFPT      S++  S++   G +    MNLDFHET  GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ +RE+K
Sbjct:    1 MLAPWGLAFRFPTARDMVPSVS--SSLFRDGSRS-LDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEK 84          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: I1HBS1_BRADI (SHSP domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HBS1_BRADI)

HSP 1 Score: 60.5 bits (145), Expect = 5.230e-9
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 MSITRTGSI-DPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNE 345
            MS+ R GS+ DPF   + D  DS+ R ++  +  SS F T  F  +                    +D+ ET +     ADLPG+KKE++ V++++   VL V+GER +E+E KN+
Sbjct:    1 MSLVRRGSVFDPFSQDLWDPIDSIFRSIVPAAAASSDFDTAAFVNA-------------------RMDWKETPEAHVFKADLPGVKKEEVKVEVED-GNVLVVSGERSREKEDKND 96          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.260e-8
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   58 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNE 345
            F +    +  P  +  R P   FP SS + L+AI           ++D+ ETS+     ADLPG+KKE++ V+I+++  VL ++GER+ E+E+KN+
Sbjct:    8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERKVEKEEKND 102          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: UPI0006B511B7 (Hsp20/alpha crystallin family protein n=1 Tax=Desulfatitalea tepidiphila TaxID=1185843 RepID=UPI0006B511B7)

HSP 1 Score: 57.8 bits (138), Expect = 4.930e-8
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   28 DPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKN 342
            DPF+  M DVFD   R L  P   S +    G                    +   +D  ET K F + A++P +KKED++V +DN  GVLT+ GER+QE+E+KN
Sbjct:    7 DPFKE-MEDVFDRYTRALDWPRRSSQQMMATG-------------------DWAPRVDISETEKEFMIKAEIPEVKKEDVSVTVDN--GVLTIRGERKQEKEEKN 89          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3)

HSP 1 Score: 58.2 bits (139), Expect = 5.960e-8
Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 1
Query:  196 LDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREK 336
            +D HE+S G+ +SADLPGMKK++I+V+ +N  G+LT++GE++QE+EK
Sbjct:   76 VDVHESSDGYHISADLPGMKKDEISVNCEN--GILTISGEKKQEQEK 120          
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A8J5WXA2_ZIZPA (SHSP domain-containing protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WXA2_ZIZPA)

HSP 1 Score: 55.5 bits (132), Expect = 4.460e-7
Identity = 36/111 (32.43%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    7 ITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
            I R+   DPF   + D FD       + SG  S FP   F  +S A              G  +D+ ET +     AD+PG+KKE++ V++++   +L ++GER QE+E+K
Sbjct:    4 IRRSNVFDPFSFDLWDPFDGFP--FGSGSGSGSLFPRSSFDPTSFA--------------GARIDWKETGEAHVFKADVPGLKKEEVKVEVED-GNILQISGERLQEQEEK 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ8_FUCSE6.760e-6281.15Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
D7FUU6_ECTSI5.060e-2553.47Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5JPQ3_9PHAE1.720e-1954.65HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5JFM4_9PHAE2.970e-1941.35HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KKF0_9PHAE3.810e-1852.87HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
I1HBS1_BRADI5.230e-933.62SHSP domain-containing protein n=1 Tax=Brachypodiu... [more]
A0A6J0ZW59_9ROSI2.260e-835.4217.3 kDa class I heat shock protein-like n=1 Tax=H... [more]
UPI0006B511B74.930e-837.14Hsp20/alpha crystallin family protein n=1 Tax=Desu... [more]
A0A0D2UFN1_CAPO35.960e-855.32Small HspC2 heat shock protein n=1 Tax=Capsaspora ... [more]
A0A8J5WXA2_ZIZPA4.460e-732.43SHSP domain-containing protein n=2 Tax=Zizania pal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94728contigH-elongata_contig94728:305..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FUU6
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.513791-CDS-H-elongata_contig94728:304..3421622931342.513791-CDS-H-elongata_contig94728:304..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94728 305..342 +
1691679797.4547112-CDS-H-elongata_contig94728:304..3421691679797.4547112-CDS-H-elongata_contig94728:304..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94728 305..342 +
1622931342.5375478-CDS-H-elongata_contig94728:929..12601622931342.5375478-CDS-H-elongata_contig94728:929..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94728 930..1260 +
1691679797.4712634-CDS-H-elongata_contig94728:929..12601691679797.4712634-CDS-H-elongata_contig94728:929..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94728 930..1260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94728.16886.1prot_H-elongata_contig94728.16886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94728 305..1260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94728.16886.1

>prot_H-elongata_contig94728.16886.1 ID=prot_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MSITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALL
SAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVL
TVTGERRQEREKKNECDNEQRK*
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mRNA from alignment at H-elongata_contig94728:305..1260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94728.16886.1 ID=mRNA_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig94728:305..1260+ (Himanthalia elongata Himel1 dioecious)
ATGAGCATCACCCGCACCGGATCGATCGACCCCTTCAGGTGAGCAATCGC AAGTGGTGCTATGAATCTTGTAACCTCTGCAGTAGTTTTTGCGGGGAAGT CTTCATCTGTTCCAGGCTCGAACACAGTCGATTTTTGGATGAAGCGGACA GGCCTCACAGAGCATGTGATCGCTTTGCTCTGAAGCCATACCGTCTCGTT GAATTGTACTTGTGATTCTTTTTGGAGAAATCCGCTGGGGTCTTCCCCCG TGTGGACTGTTTTGAGCTGAATTGTTGCTGTAGAAAATAACCTAGAGAGA GCTATGTCCGACAGTCCAGCACTAGGTGCGACAAAGAACGGGTTATTTTC TGTCAAAAAAGAAACTACGATGCCCTCCAGCGAATCACGATTATCCTATT GATGGTGACATGATTGGCCCACCCATCCAGAGTACCTCACTCCAATCCGC ACGATCGCTGGATCTATATATTTTTGTACTACTGAAATCTAGACTGGCCG CTGGGAAGTTTCCCCATACCATCAAGACTTAAATAATACAAGGGATATCC GCTCACAAAGAATTCCCCACCGATCTCCCTCTCTTGCCCCGTTGCATGTC ACGTATCACCGTATGCAACGCACAGGCACGCCATGCACGATGTATTCGAC TCTATGGAGCGTGATCTCATGGCACCGTCTGGAATGAGCTCCAGGTTCCC CACCGGCGGCTTTCCCGGCAGCTCAATTGCCTTGCTCTCCGCCATCCCCA CAGTGGGCGTTAAAGAAGGCTTCGGCATGAACCTGGACTTCCATGAGACC AGCAAAGGCTTCGAGCTGAGCGCAGATCTCCCCGGCATGAAGAAGGAGGA CATCACGGTGGACATCGACAACGAGTCCGGTGTCCTGACCGTGACAGGAG AACGCCGGCAGGAGAGGGAGAAGAAGAACGAATGCGACAACGAACAGCGC AAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig94728:305..1260+

>mRNA_H-elongata_contig94728.16886.1 ID=mRNA_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig94728:305..1260+ (Himanthalia elongata Himel1 dioecious)
ATGAGCATCACCCGCACCGGATCGATCGACCCCTTCAGATGAGCATCACC
CGCACCGGATCGATCGACCCCTTCAGGCACGCCATGCACGATGTATTCGA
CTCTATGGAGCGTGATCTCATGGCACCGTCTGGAATGAGCTCCAGGTTCC
CCACCGGCGGCTTTCCCGGCAGCTCAATTGCCTTGCTCTCCGCCATCCCC
ACAGTGGGCGTTAAAGAAGGCTTCGGCATGAACCTGGACTTCCATGAGAC
CAGCAAAGGCTTCGAGCTGAGCGCAGATCTCCCCGGCATGAAGAAGGAGG
ACATCACGGTGGACATCGACAACGAGTCCGGTGTCCTGACCGTGACAGGA
GAACGCCGGCAGGAGAGGGAGAAGAAGAACGAATGCGACAACGAACAGCG
CAAGTGAGCACGCCATGCACGATGTATTCGACTCTATGGAGCGTGATCTC
ATGGCACCGTCTGGAATGAGCTCCAGGTTCCCCACCGGCGGCTTTCCCGG
CAGCTCAATTGCCTTGCTCTCCGCCATCCCCACAGTGGGCGTTAAAGAAG
GCTTCGGCATGAACCTGGACTTCCATGAGACCAGCAAAGGCTTCGAGCTG
AGCGCAGATCTCCCCGGCATGAAGAAGGAGGACATCACGGTGGACATCGA
CAACGAGTCCGGTGTCCTGACCGTGACAGGAGAACGCCGGCAGGAGAGGG
AGAAGAAGAACGAATGCGACAACGAACAGCGCAAGTGA
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