mRNA_H-elongata_contig94728.16886.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 196 bits (498), Expect = 6.760e-62 Identity = 99/122 (81.15%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MSITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNECDNEQRK 366
MS++R GSIDPFR AMHDVFDSMERDLMAPSGMSSRF T FPGSS+AL+SA+P++GV+ G GMNLDFHET+KG+ELSADLPGMKKEDI VDID+ESGVLTVTGER+QERE+K+E DNEQRK
Sbjct: 1 MSLSRAGSIDPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 103 bits (256), Expect = 5.060e-25 Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 46 MHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEG---FGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
++DVF S+ER+++AP G++SRFPT + + PT +G GM+LDFHET GFEL ADLPGMKKED+++D+D ESGVLTV+GER+ E+E+K
Sbjct: 20 INDVFGSIEREMLAPWGLASRFPT------TRDMFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEK 114
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.720e-19 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 79 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREK 336
++AP G +SRFPT S++ S++ G + MNLDFHET GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ +REK
Sbjct: 1 MLAPWGFASRFPTARDMVPSVS--SSLFRDGSRS-LDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREK 83
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.970e-19 Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 52 DVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSA-------------------------------IPTVG---VKEG---FGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
DVF S+ER+++AP G++SRFPT S + +P+V ++G MNLDFHET GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ ERE+K
Sbjct: 7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEK 139
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.810e-18 Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 79 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
++AP G++ RFPT S++ S++ G + MNLDFHET GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ +RE+K
Sbjct: 1 MLAPWGLAFRFPTARDMVPSVS--SSLFRDGSRS-LDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEK 84
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: I1HBS1_BRADI (SHSP domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HBS1_BRADI) HSP 1 Score: 60.5 bits (145), Expect = 5.230e-9 Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 1 MSITRTGSI-DPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNE 345
MS+ R GS+ DPF + D DS+ R ++ + SS F T F + +D+ ET + ADLPG+KKE++ V++++ VL V+GER +E+E KN+
Sbjct: 1 MSLVRRGSVFDPFSQDLWDPIDSIFRSIVPAAAASSDFDTAAFVNA-------------------RMDWKETPEAHVFKADLPGVKKEEVKVEVED-GNVLVVSGERSREKEDKND 96
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI) HSP 1 Score: 58.9 bits (141), Expect = 2.260e-8 Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 58 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKNE 345
F + + P + R P FP SS + L+AI ++D+ ETS+ ADLPG+KKE++ V+I+++ VL ++GER+ E+E+KN+
Sbjct: 8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERKVEKEEKND 102
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: UPI0006B511B7 (Hsp20/alpha crystallin family protein n=1 Tax=Desulfatitalea tepidiphila TaxID=1185843 RepID=UPI0006B511B7) HSP 1 Score: 57.8 bits (138), Expect = 4.930e-8 Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 28 DPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKKN 342
DPF+ M DVFD R L P S + G + +D ET K F + A++P +KKED++V +DN GVLT+ GER+QE+E+KN
Sbjct: 7 DPFKE-MEDVFDRYTRALDWPRRSSQQMMATG-------------------DWAPRVDISETEKEFMIKAEIPEVKKEDVSVTVDN--GVLTIRGERKQEKEEKN 89
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3) HSP 1 Score: 58.2 bits (139), Expect = 5.960e-8 Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 1
Query: 196 LDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREK 336
+D HE+S G+ +SADLPGMKK++I+V+ +N G+LT++GE++QE+EK
Sbjct: 76 VDVHESSDGYHISADLPGMKKDEISVNCEN--GILTISGEKKQEQEK 120
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Match: A0A8J5WXA2_ZIZPA (SHSP domain-containing protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WXA2_ZIZPA) HSP 1 Score: 55.5 bits (132), Expect = 4.460e-7 Identity = 36/111 (32.43%), Postives = 56/111 (50.45%), Query Frame = 1
Query: 7 ITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKEGFGMNLDFHETSKGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREKK 339
I R+ DPF + D FD + SG S FP F +S A G +D+ ET + AD+PG+KKE++ V++++ +L ++GER QE+E+K
Sbjct: 4 IRRSNVFDPFSFDLWDPFDGFP--FGSGSGSGSLFPRSSFDPTSFA--------------GARIDWKETGEAHVFKADVPGLKKEEVKVEVED-GNILQISGERLQEQEEK 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94728.16886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94728.16886.1 >prot_H-elongata_contig94728.16886.1 ID=prot_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp MSITRTGSIDPFRHAMHDVFDSMERDLMAPSGMSSRFPTGGFPGSSIALLback to top mRNA from alignment at H-elongata_contig94728:305..1260+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94728.16886.1 ID=mRNA_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig94728:305..1260+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94728:305..1260+ >mRNA_H-elongata_contig94728.16886.1 ID=mRNA_H-elongata_contig94728.16886.1|Name=mRNA_H-elongata_contig94728.16886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig94728:305..1260+ (Himanthalia elongata Himel1 dioecious)back to top |