mRNA_H-elongata_contig94709.16884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94709.16884.1
Unique NamemRNA_H-elongata_contig94709.16884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.810e-28
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            GYK++ GAYVQVNCPAIS  +WHPFSLFPVPGP PRAG HVEAVGDWT ELFRL
Sbjct:    5 GYKYQPGAYVQVNCPAISVSEWHPFSLFPVPGPNPRAGLHVEAVGDWTNELFRL 58
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BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.040e-25
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            GY+FKVG+Y+QVNCPAISA +WHPFS+FPVPGP PR GF+VEAVGDWTQELFRL
Sbjct:  221 GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRL 274
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BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.290e-25
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            GY+F VG+Y+QVNCPAISA +WHPFS+FPVPGP PR GF+VEAVGDWTQELFRL
Sbjct:  454 GYQFNVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRL 507
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.290e-24
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFR 159
            GY++K GAYVQVNCPAIS  +WHPFSLFPVPGP PRAGFHVEAVGDWT E+FR
Sbjct:  478 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGPRPRAGFHVEAVGDWTNEMFR 530
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.560e-23
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFR 159
            GY++K GAYVQVNCPAIS  +WHPFSLFPVPG  PRAGFHVEAVGDWT E+FR
Sbjct:  466 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGSRPRAGFHVEAVGDWTNEMFR 518
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A6I9T7L4_SESIN (LOW QUALITY PROTEIN: respiratory burst oxidase homolog protein E n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9T7L4_SESIN)

HSP 1 Score: 65.9 bits (159), Expect = 3.270e-11
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            G+K+K G Y+ + CPAIS+++WHPFSL   PG       H+  VGDWTQEL R+
Sbjct:  608 GFKYKSGQYIFLQCPAISSFEWHPFSLTSAPGDN-YLSVHIRTVGDWTQELKRV 660
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A4Y7JK72_PAPSO (FAD-binding FR-type domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JK72_PAPSO)

HSP 1 Score: 65.1 bits (157), Expect = 4.860e-11
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            G+K+K G Y+ + CP IS+++WHPFS+   PG       H+  VGDWTQEL R+
Sbjct:  117 GFKYKSGQYIFLQCPTISSFEWHPFSITSAPGD-DYLSVHIRTVGDWTQELMRV 169
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A4Y7K4N3_PAPSO (FAD-binding FR-type domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K4N3_PAPSO)

HSP 1 Score: 65.1 bits (157), Expect = 5.230e-11
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            G+K+K G Y+ + CP IS+++WHPFS+   PG       H+  VGDWTQEL R+
Sbjct:   47 GFKYKSGQYIFLQCPTISSFEWHPFSITSAPGD-DYLSVHIRTVGDWTQELMRV 99
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: A0A5N5MED2_9ROSI (FAD-binding FR-type domain-containing protein n=5 Tax=Saliceae TaxID=238069 RepID=A0A5N5MED2_9ROSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            G+K+K G Y+ + CPAIS+++WHPFS+   PG       H+  VGDWT+EL R+
Sbjct:  606 GFKYKSGQYIFLQCPAISSFEWHPFSITSAPGD-DHLSVHIRVVGDWTEELKRV 658
[Close]
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Match: D7TCA4_VITVI (Uncharacterized protein n=5 Tax=Vitis TaxID=3603 RepID=D7TCA4_VITVI)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQELFRL 162
            G+K+K G Y+ + CPAIS+++WHPF++   PG       H+  VGDWTQEL R+
Sbjct:  616 GFKYKSGQYIFLQCPAISSFEWHPFTITSAPGD-DHLSVHIRTVGDWTQELKRV 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94709.16884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D0_ECTSI7.810e-2883.33Putative respiratory burst oxidase homolog protein... [more]
D7G8C4_ECTSI1.040e-2583.33Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE4.290e-2581.48FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHI2_9PHAE1.290e-2483.02FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI1.560e-2381.13Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6I9T7L4_SESIN3.270e-1151.85LOW QUALITY PROTEIN: respiratory burst oxidase hom... [more]
A0A4Y7JK72_PAPSO4.860e-1148.15FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A4Y7K4N3_PAPSO5.230e-1148.15FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A5N5MED2_9ROSI6.110e-1148.15FAD-binding FR-type domain-containing protein n=5 ... [more]
D7TCA4_VITVI6.110e-1148.15Uncharacterized protein n=5 Tax=Vitis TaxID=3603 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94709contigH-elongata_contig94709:1473..2309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog2880.D7G8C4
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.3513358-CDS-H-elongata_contig94709:1472..15051622931342.3513358-CDS-H-elongata_contig94709:1472..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94709 1473..1505 -
1691679797.383168-CDS-H-elongata_contig94709:1472..15051691679797.383168-CDS-H-elongata_contig94709:1472..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94709 1473..1505 -
1622931342.3628783-CDS-H-elongata_contig94709:2180..23091622931342.3628783-CDS-H-elongata_contig94709:2180..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94709 2181..2309 -
1691679797.3947582-CDS-H-elongata_contig94709:2180..23091691679797.3947582-CDS-H-elongata_contig94709:2180..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94709 2181..2309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94709.16884.1prot_H-elongata_contig94709.16884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94709 1473..2309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94709.16884.1

>prot_H-elongata_contig94709.16884.1 ID=prot_H-elongata_contig94709.16884.1|Name=mRNA_H-elongata_contig94709.16884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
GYKFKVGAYVQVNCPAISAYDWHPFSLFPVPGPIPRAGFHVEAVGDWTQE
LFRL
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mRNA from alignment at H-elongata_contig94709:1473..2309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94709.16884.1 ID=mRNA_H-elongata_contig94709.16884.1|Name=mRNA_H-elongata_contig94709.16884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig94709:1473..2309- (Himanthalia elongata Himel1 dioecious)
GGCTACAAGTTTAAGGTAGGAGCTTATGTTCAAGTCAACTGTCCCGCCAT
CAGTGCCTACGATTGGCATCCATTCTCTTTGTTTCCGGTGCCTGGGCCAA
TTCCTAGGGCTGGCTTTCATGTCGAGGCGGTACGTGAAGCCCTGCAACTG
GTTAATTTTGGTGATGTCGGCCCTGCGTGATTCCTGCTCTCGCTTGTCGC
ATTTGGCCGATGGCGTTCGTGGTTGACTAAACAAGGGGGAATCAAGACGA
ATAAGACTCGTTTGCGTACCGAACCATTTGCCAACACCCCCCCCCCCCCC
CCCCCTCCCCTTCCCCCCCTTTTTTAAAATTAAATTCCCCAGAACTTATG
ACAAAAAAAAAAAAAAAAAANNNNNNNNNNGGGGGAAACAAGGAGGAAAA
GGGCTGGTGTGGGTGCCGAACTTTTGGCAAACGCCCCCCCCCCCCCTATG
GCATGTCCACTCCTTGATTAAATCGTAATGCCTAGAGACTAGTAGGCAAA
TAAAGAACAGAAAAGGGGGAAAAACAAGGAATATAGCAGGGAATTTGATC
AACAACCTACCAATCAATCCAGATACTTTGAACTTGTCAAGGCTCGGCTT
TTGGCTCGGGTCGGTGCATGTATTCTGCCAATTAGTGCCGATCACAGACT
TTGTAAGGATTGTCGTGGCTTCGCCCCCGGAGGCCATCCGGACCGAAGAA
AATCTTGTGCTTCTCGCGTCTTTTATGTAGCTGTACGTCAAATCCGAAAG
CGTACGTGCCAAAGCGGCATTTTTGTGTGTTCGTTTGGCGCTTTGTAACG
GCAGGTGGGCGACTGGACCCAAGAACTCTTCCGACTT
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Coding sequence (CDS) from alignment at H-elongata_contig94709:1473..2309-

>mRNA_H-elongata_contig94709.16884.1 ID=mRNA_H-elongata_contig94709.16884.1|Name=mRNA_H-elongata_contig94709.16884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig94709:1473..2309- (Himanthalia elongata Himel1 dioecious)
GGCTACAAGTTTAAGGTAGGAGCTTATGTTCAAGTCAACTGTCCCGCCAT
CAGTGCCTACGATTGGCATCCATTCTCTTTGTTTCCGGTGCCTGGGCCAA
TTCCTAGGGCTGGCTTTCATGTCGAGGCGGGCTACAAGTTTAAGGTAGGA
GCTTATGTTCAAGTCAACTGTCCCGCCATCAGTGCCTACGATTGGCATCC
ATTCTCTTTGTTTCCGGTGCCTGGGCCAATTCCTAGGGCTGGCTTTCATG
TCGAGGCGGTGGGCGACTGGACCCAAGAACTCTTCCGACTTGTGGGCGAC
TGGACCCAAGAACTCTTCCGACTT
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