mRNA_H-elongata_contig94654.16882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94654.16882.1
Unique NamemRNA_H-elongata_contig94654.16882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A6H5L5B2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5B2_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.170e-59
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 1
Query:    1 GEAAHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKLGGHM 369
            GEAAH V ISRSHTGEGGNVVEKYLEGH  LLAGGAGYK+LLV+DG+ E YVHVTAIKSWDVCAAEAVMKASGG F+DI+G  L YPMEYDS HSQALFKNGIIA  ++EQ  +FV KL G++
Sbjct:  249 GEAAHTVTISRSHTGEGGNVVEKYLEGHQTLLAGGAGYKSLLVLDGKAEAYVHVTAIKSWDVCAAEAVMKASGGGFSDIEGKQLAYPMEYDSTHSQALFKNGIIATASKEQQDFFVTKLDGNL 371          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A835YUA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.690e-38
Identity = 72/124 (58.06%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 GEAAHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKLGGHMK 372
            GEAA  VAISRSHTG G +VV KYL GH  L AGGAG+KALLVVDG    YVHVT IKSWDVCAA+AV+ A GG FTD DG  LKY  E        +F +GI+A Q+ E   ++++ LGG+++
Sbjct:  193 GEAAETVAISRSHTGAGEDVVTKYLPGHKSLQAGGAGFKALLVVDGVANAYVHVTKIKSWDVCAADAVLHAIGGGFTDADGQHLKYNTE------DTVFTHGIVATQSAESQAWYLEHLGGNLE 310          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A835YRT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 8.600e-37
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 GEAAHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKLGGHM 369
            G+A   VAISRSHTG G +VV K   GH PLLAGGAGYKALLV+DG    YVHVT IK+WDVCAA+AV+ A GG FTD+DG  LKY  E        +FK G++A Q++    ++++ LGG+M
Sbjct:  243 GDAETTVAISRSHTGAGEDVVTKRFPGHRPLLAGGAGYKALLVLDGTANAYVHVTKIKAWDVCAADAVLHAIGGGFTDVDGKRLKYLAE------DPVFKRGVVATQSKVSQAWYLEHLGGNM 359          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: W7TL13_9STRA (Myo inositol monophosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL13_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.500e-30
Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   10 AHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKL 357
            A KV ISRSHTG G +VV +YL G  P+ AGG+GYKAL V++G+   YVHVT IKSWDVCAA+AV+ A+GG FT++ G  L Y  +        L   GIIAA   + H ++V+KL
Sbjct:  279 ADKVVISRSHTGSGADVVSEYLPGKQPVFAGGSGYKALRVLEGDANAYVHVTKIKSWDVCAADAVVHAAGGKFTNLKGERLVYEKD------DPLISGGIIAAADSKMHAWYVEKL 388          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A7S2SAR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAR3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.050e-29
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 GEAAHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKLGGH 366
            G+AA  V +SRSHTGEG  +VE YL G T L AGGAGYKALLV  G  E Y+HVT  K WD CAA+AV+ A GG+FT ++G  +KY      D +  + ++G + A + + H++ + +L  H
Sbjct:  162 GDAASTVTLSRSHTGEGAAMVEAYLPGRTSLPAGGAGYKALLVAGGSAEAYLHVTKSKIWDACAADAVIHAIGGEFTQLNGDPVKY------DPTDPVLRHGFLGASSPKSHEWHLGRLKEH 277          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A1I7RKV4_BURXY ((pine wood nematode) hypothetical protein n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7RKV4_BURXY)

HSP 1 Score: 93.6 bits (231), Expect = 3.070e-20
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 VAISRSHTGEGGNVVEKYLEG-HTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAA 318
            + +SRSHTG+   + EK   G +T   AGGAGYKAL V++G    YVH TAIK WDVCAA+A+M+A+GG   D+DG  L Y      D S A+ KNG++ A
Sbjct:  235 IVVSRSHTGKVKEIAEKAFGGEYTVEPAGGAGYKALRVLNGTAAFYVHTTAIKKWDVCAADALMRAAGGKLMDLDGQPLLY-----QDRSVAMNKNGLMVA 330          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A6J2YAL2_SITOR (putative inositol monophosphatase 3 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YAL2_SITOR)

HSP 1 Score: 92.0 bits (227), Expect = 8.330e-20
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   16 KVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKL 357
            K  ISRSH G     +EK  + +  ++A GAGYK L V  GE + Y+H+TAIK WD+CA  A+++A GG  T  DG  L Y      D +  + K+G+IA  T + H +F +KL
Sbjct:  214 KFIISRSHRGTVEQALEKNFKNYEVVIAAGAGYKVLKVAKGEVDAYIHITAIKKWDICAGNAILRALGGQMTTKDGQLLTY-----LDDTDVVNKDGLIA--TLKYHDFFTNKL 320          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A7J7K5K9_BUGNE (IMPAD1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K5K9_BUGNE)

HSP 1 Score: 90.5 bits (223), Expect = 5.340e-19
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   16 KVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKLG 360
            K+ ISRSH G+G  +V++   G   + AGGAGYKA+ V+ G+ + Y HVT IK WD+CA  A++ A GG    +   ++ Y  E     S  L KNG++A+ +     Y++DKLG
Sbjct:  254 KIIISRSHKGDGEEIVKQAFGGGKVISAGGAGYKAVEVIRGKADVYAHVTLIKKWDICAGNALLNAVGGKMKTLKNETITYDKE-----SGPLNKNGLLASMSH--FNYYLDKLG 361          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A811JSE9_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811JSE9_9BILA)

HSP 1 Score: 88.6 bits (218), Expect = 4.800e-18
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   16 KVAISRSHTGEGGNVVEKYLEG-HTPLLAGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQT 324
            K+ +SRSHTG+   + E    G +T   AGGAGYK L V++G    YVH TAIK WDVCAA+A+M+A+ G   D++G  L Y      D S AL KNG++   T
Sbjct:  234 KIVVSRSHTGKVKEIAESAFGGEYTVEPAGGAGYKTLRVLNGTAAFYVHTTAIKKWDVCAADALMRAANGKLMDLEGQLLLY-----QDRSTALNKNGLMTGFT 332          
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Match: A0A8K0KBH8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KBH8_LADFU)

HSP 1 Score: 87.0 bits (214), Expect = 7.810e-18
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   19 VAISRSHTGEGGNVVEKYLEGHTPLL-AGGAGYKALLVVDGETEGYVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFKNGIIAAQTQEQHKYFVDKL 357
            + +SRSH GE  N+ +        +  AGGAGYK L V++G    YVHVTAIK WD+CA +A++++ GG+ T IDG  L Y     S  S    + G+IA  T + H +F+++L
Sbjct:  225 IIVSRSHAGEVKNISQIAFGSDIDVTSAGGAGYKVLEVINGNASAYVHVTAIKKWDICAGDALLRSVGGNMTKIDGHELDY-----SAKSSQFNRGGLIA--TLQDHLWFIERL 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94654.16882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5B2_9PHAE1.170e-5978.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUA7_9STRA2.690e-3858.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRT6_9STRA8.600e-3756.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TL13_9STRA2.500e-3052.59Myo inositol monophosphatase n=2 Tax=Monodopsidace... [more]
A0A7S2SAR3_9STRA5.050e-2947.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1I7RKV4_BURXY3.070e-2050.50(pine wood nematode) hypothetical protein n=1 Tax=... [more]
A0A6J2YAL2_SITOR8.330e-2042.11putative inositol monophosphatase 3 n=1 Tax=Sitoph... [more]
A0A7J7K5K9_BUGNE5.340e-1940.87IMPAD1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A0A811JSE9_9BILA4.800e-1847.12Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A8K0KBH8_LADFU7.810e-1841.23Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94654contigH-elongata_contig94654:124..2030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog2880.D8LQJ2
Preferred nameIMPAD1
KEGG rclassRC00078
KEGG koko:K15759
KEGG ReactionR00188,R00508,R01185,R01186,R01187
KEGG Pathwayko00562,ko00920,ko01100,ko01120,ko04070,map00562,map00920,map01100,map01120,map04070
KEGG ModuleM00131
GOsGO:0001501,GO:0001503,GO:0001958,GO:0002062,GO:0002063,GO:0003674,GO:0003824,GO:0004441,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005829,GO:0006022,GO:0006029,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008252,GO:0008254,GO:0008441,GO:0008610,GO:0008654,GO:0008934,GO:0009058,GO:0009100,GO:0009117,GO:0009150,GO:0009259,GO:0009653,GO:0009790,GO:0009791,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0016311,GO:0016312,GO:0016604,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019637,GO:0019693,GO:0023052,GO:0030154,GO:0030203,GO:0030204,GO:0030326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0035107,GO:0035108,GO:0035113,GO:0036075,GO:0042578,GO:0042733,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045017,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0048468,GO:0048513,GO:0048598,GO:0048705,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050427,GO:0050654,GO:0050789,GO:0050794,GO:0050896,GO:0051216,GO:0051716,GO:0052745,GO:0052834,GO:0055086,GO:0060173,GO:0060348,GO:0060349,GO:0060350,GO:0061448,GO:0065007,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1903510
EggNOG free text desc.inositol monophosphate 3-phosphatase activity
EggNOG OGsCOG1218@1,KOG3853@2759
EC3.1.3.25,3.1.3.7
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInositol monophosphatase
Ec32 orthologEc-10_005870.1
Exons3
Model size375
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94654.16882.1prot_H-elongata_contig94654.16882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94654 124..2030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.16694-CDS-H-elongata_contig94654:123..2231622931342.16694-CDS-H-elongata_contig94654:123..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 124..223 -
1691679797.2926579-CDS-H-elongata_contig94654:123..2231691679797.2926579-CDS-H-elongata_contig94654:123..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 124..223 -
1622931342.1905842-CDS-H-elongata_contig94654:1267..13681622931342.1905842-CDS-H-elongata_contig94654:1267..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 1268..1368 -
1691679797.3124065-CDS-H-elongata_contig94654:1267..13681691679797.3124065-CDS-H-elongata_contig94654:1267..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 1268..1368 -
1622931342.2071278-CDS-H-elongata_contig94654:1856..20301622931342.2071278-CDS-H-elongata_contig94654:1856..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 1857..2030 -
1691679797.3309183-CDS-H-elongata_contig94654:1856..20301691679797.3309183-CDS-H-elongata_contig94654:1856..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94654 1857..2030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94654.16882.1

>prot_H-elongata_contig94654.16882.1 ID=prot_H-elongata_contig94654.16882.1|Name=mRNA_H-elongata_contig94654.16882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
GEAAHKVAISRSHTGEGGNVVEKYLEGHTPLLAGGAGYKALLVVDGETEG
YVHVTAIKSWDVCAAEAVMKASGGDFTDIDGLSLKYPMEYDSDHSQALFK
NGIIAAQTQEQHKYFVDKLGGHMK*
back to top

mRNA from alignment at H-elongata_contig94654:124..2030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94654.16882.1 ID=mRNA_H-elongata_contig94654.16882.1|Name=mRNA_H-elongata_contig94654.16882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-elongata_contig94654:124..2030- (Himanthalia elongata Himel1 dioecious)
GGCGAAGCGGCGCACAAGGTCGCGATTTCTCGCTCTCACACAGGTGAAGG TGGGAACGTGGTCGAGAAATACCTAGAGGGACACACCCCACTGTTGGCGG GAGGAGCTGGGTACAAGGCACTGCTGGTAGTGGACGGCGAGACGGAGGGT TACGTCCACGTCACGGCCATCAAGGTATTTGGCTCAAGAACAAAAAATAG CACAGCACGGGTACCTGTATCGATATGATAGCGACCATCGACCCACCTTT GGAGACTGTTTGTCATGTGCCTGCTAGTAGTCGTCGTAGTCGTCAGGAGG AATTTTTGGAGTTTCTGTGGTTTCTGTGGTTCAAGTGGTACCAGATACGA GGGCATGATCCTTGTGCCTTGTATATAGTAAATATTTATAGTGAAAAGGA AGTACGACTATTGTAATGAAATACGATCTCGACGCGCCGCGACCCGTTCG AAATTAATCTCGCGGTCTTTGATTTGGCTCAAGAGCAAGGACCACGGACG ACCTCTTGATCGCGTGACCGAGCTCCGCTCGTGATCTCATTTCCAGTACA AATATGCTCTAAAGCTTATTAAGGCCAATATGCTCTAAATGTTTGTTGGC CTCCACTGAATCCCGCACTTTGGGCATCTCACCATCGCATGGGACGAAAC GGGATGGATCAGTCGTGGGACGTGTGCGCTGCCGAGGCTGTGATGAAGGC TAGCGGAGGCGACTTCACGGACATTGATGGACTCTCGTTGAAGTACCCCA TGGAGTACGATAGGTGCGCTGGCTGTACTGGCTGAATGTCGAGTGATGAA TGATGAATGATGACTGATGACCCTGCCTTGTAGTAGAAACGTGTTTCTTT GGTGTTGTAGAGTAGGCAGAGAGAGTCGATGAGAATGTCAATACCTCTAC CGTGGGACGGGACTGTGAATATTCCGACGGTTTGGCGATTCGCATTGTAA ACTTTTAAATACGTGGGATGAGATGGTGTGTGTGTGTGTGGGGGGGGGCT TTGACCCACCGGGTAAAACCTTTTCGTCGTTATCGTCGATATCGTCGGGA GGAGCAAGTCGCCTCGTCTTGCCCCTCTCTGCCTCACGAATAGCAACAGC AATAGCAACATCAATAGCAACATCAACAGCAAGAGTATGATAAGGGGGCA TGGTAAGGGGGCATGGTAAGGGGGCATGATAAGGGGGCATGGTAAGGGCA TGGCTCAAAAGTAAGGCAAGTTAGAAGGCGAGGCGATATAGCAGCCCGAA AATTCAACGGTTTTATTTTTAAAAATTGAACCCTCCGAACATCCACTGTG TGTACAGTATGGGTACCGTATGTTTTATTGTTTTTATTTTAAAAACCCCT TGAACTCATTCCAACCCTCCGAACATCCACGCCTTCTTAGCACCATGAGA GGTGCAGTCCAGGGGACCAACTATATGGGTACCGTATGTTTTATTGTTTT TCCCTGCGACGGCCCCTCTCGGTTATGGCAAGGGCAAGCCTCGCCTCGCC GCGTCATCTGTTATTGTTATTAATGTAATGCTGGTAGTGTTGTTATCTTG TACGGTACCTGTATCTCAATAGAGTAGCAGCACCTGCTGAGTTACGATTG ATGGGTCATGATTTATGGATCATGCTTGAAGCTCGAAATATTTGATAATT GAGGCGTTCGACGAGGTCAACGGTAGGTAGCGTTTCCTGCAGTGTTATGT CGCTGTGCTCCAATTGATCATCGTGTGTATCGTGTGTATCGTGTGTATCG TGTGTCGTGTGTCGTGTGTCTGTCGACCGATGTCCCGCTGTGTTGCCATG ATGTCAGCGATCACTCTCAGGCGCTCTTCAAGAACGGCATAATCGCCGCG CAGACTCAAGAGCAGCACAAGTATTTCGTTGACAAGCTTGGGGGGCACAT GAAATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig94654:124..2030-

>mRNA_H-elongata_contig94654.16882.1 ID=mRNA_H-elongata_contig94654.16882.1|Name=mRNA_H-elongata_contig94654.16882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig94654:124..2030- (Himanthalia elongata Himel1 dioecious)
GGCGAAGCGGCGCACAAGGTCGCGATTTCTCGCTCTCACACAGGTGAAGG
TGGGAACGTGGTCGAGAAATACCTAGAGGGACACACCCCACTGTTGGCGG
GAGGAGCTGGGTACAAGGCACTGCTGGTAGTGGACGGCGAGACGGAGGGT
TACGTCCACGTCACGGCCATCAAGGGCGAAGCGGCGCACAAGGTCGCGAT
TTCTCGCTCTCACACAGGTGAAGGTGGGAACGTGGTCGAGAAATACCTAG
AGGGACACACCCCACTGTTGGCGGGAGGAGCTGGGTACAAGGCACTGCTG
GTAGTGGACGGCGAGACGGAGGGTTACGTCCACGTCACGGCCATCAAGTC
GTGGGACGTGTGCGCTGCCGAGGCTGTGATGAAGGCTAGCGGAGGCGACT
TCACGGACATTGATGGACTCTCGTTGAAGTACCCCATGGAGTACGATAGT
CGTGGGACGTGTGCGCTGCCGAGGCTGTGATGAAGGCTAGCGGAGGCGAC
TTCACGGACATTGATGGACTCTCGTTGAAGTACCCCATGGAGTACGATAG
CGATCACTCTCAGGCGCTCTTCAAGAACGGCATAATCGCCGCGCAGACTC
AAGAGCAGCACAAGTATTTCGTTGACAAGCTTGGGGGGCACATGAAATGA
CGATCACTCTCAGGCGCTCTTCAAGAACGGCATAATCGCCGCGCAGACTC
AAGAGCAGCACAAGTATTTCGTTGACAAGCTTGGGGGGCACATGAAATGA
back to top