mRNA_H-elongata_contig94575.16879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94575.16879.1
Unique NamemRNA_H-elongata_contig94575.16879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.360e-73
Identity = 114/141 (80.85%), Postives = 126/141 (89.36%), Query Frame = 1 
Query:    4 ISGSDRQNPKYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDKVRLIY 426
            I GSD QNP+Y+VN+A MVQYIR  LVKCT RDRYGKETARIMEILLQNK+L+QQQ+GEMAM+PP DAR RLYRL+RDRMVS+QEVPKRADRNPN TF+LWTIKHDQ V QVV +SLYKAMLNMRLRRKFVYSNDK   I+
Sbjct:  143 IPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQ-VAQVVLESLYKAMLNMRLRRKFVYSNDKALFIH 282
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 107 bits (266), Expect = 3.440e-24
Identity = 50/127 (39.37%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++   V   ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D++V +QE+PKRAD NP  TFF W++   Q   ++ T+ +  ++  +R RRKF    +K
Sbjct:  471 QYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRI-TERVQDSLCRLRRRRKFEAEENK 596
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 105 bits (263), Expect = 8.940e-24
Identity = 50/127 (39.37%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   +V T+ +  ++  +R RRKF    +K
Sbjct:  499 QYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARV-TERVQDSLCRLRRRRKFEAEENK 624
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 105 bits (262), Expect = 1.140e-23
Identity = 49/127 (38.58%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   ++ T+ +  ++  +R RRKF    +K
Sbjct:  430 QYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARI-TERVQDSLCRLRRRRKFEAEENK 555
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 1.150e-23
Identity = 48/127 (37.80%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++    +  ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   ++  + +  ++  +R RRKF    +K
Sbjct:  437 QYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIA-ERVQDSLCRLRRRRKFEAEENK 562
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 102 bits (253), Expect = 1.970e-22
Identity = 48/127 (37.80%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++       ++DR+G  +ARI+ +L++ + LEQ+ IGE+A+LP  +AR RLY L  D++V MQE+PKRAD NP  TFF W++   Q ++  +T+ +  ++  +R RR F    +K
Sbjct:  476 QYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQ-MHVRITERVQGSLCRLRRRRTFEAEENK 601
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.980e-22
Identity = 47/127 (37.01%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V++++       ++D++G  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  +++V MQE+PKRAD NP  TFF W++       ++ T+ +  ++  +R RRKF    +K
Sbjct:  481 QYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRI-TERVQDSLCRLRRRRKFEAEENK 606
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.110e-22
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   34 YMVNIASMVQYIRSKLVKCTVRDRY--------GKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRK 390
            Y V +  +++ +R + +   +R+RY        G   ARI  +LL  K+L+ QQ+ E+AM+   + R RLYR+  D ++++QE+P+RAD +PN TF+LWT    QQV + +T  +YK  LN+RLRR+
Sbjct:  515 YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNM-QQVVEELTQRMYKGALNLRLRRQ 640
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.270e-21
Identity = 42/127 (33.07%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++ ++  Y++   +   ++D++G ++ARI+ ++L+ + LEQ+ IGE+A+LP  +AR RLY L RD+++ +QE+PKR+D NP  T + W++ +   + +V+ + +  ++  +R RR F+   +K
Sbjct:  477 QYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSV-NTFHIERVIRERVQDSICKLRSRRDFIAKENK 602
[Close]
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.350e-21
Identity = 48/127 (37.80%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:   31 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 411
            +Y+V++  +V+++R       V+D++G  +ARI+ +L++ + LEQ+ IGE+A+LP  D R RLY L  +++V MQEVPKRAD NP  TFF W++   +   +V  + +  ++  +R RRK     +K
Sbjct:  482 QYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVA-ERIQDSVCRLRRRRKAEADENK 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI2.360e-7380.85DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0P1AWK6_PLAHL3.440e-2439.37DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI8.940e-2439.37DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
G4Z0C0_PHYSP1.140e-2338.58DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
H3GD40_PHYRM1.150e-2337.80DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A484E8N6_BRELC1.970e-2237.80DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R7FY14_9STRA1.980e-2237.01DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
W7U6Z3_9STRA5.110e-2239.37DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A024GFJ4_9STRA1.270e-2133.07DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A662YGR9_9STRA2.350e-2137.80DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94575contigH-elongata_contig94575:967..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue8.5e-59
Seed eggNOG ortholog2880.D7FMS6
Preferred namePOLR3C
KEGG rclassRC02795
KEGG koko:K03023
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006359,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsKOG2587@1,KOG2587@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIEalpha/SarR/Rpc3 HTH domain
Ec32 orthologEc-21_000330.1
Exons4
Model size429
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94575.16879.1prot_H-elongata_contig94575.16879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94575 967..2275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.9142218-CDS-H-elongata_contig94575:966..11011622931341.9142218-CDS-H-elongata_contig94575:966..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 967..1101 +
1691679797.1652753-CDS-H-elongata_contig94575:966..11011691679797.1652753-CDS-H-elongata_contig94575:966..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 967..1101 +
1622931341.9292471-CDS-H-elongata_contig94575:1458..15621622931341.9292471-CDS-H-elongata_contig94575:1458..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 1459..1562 +
1691679797.1855407-CDS-H-elongata_contig94575:1458..15621691679797.1855407-CDS-H-elongata_contig94575:1458..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 1459..1562 +
1622931341.9460557-CDS-H-elongata_contig94575:1908..19931622931341.9460557-CDS-H-elongata_contig94575:1908..1993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 1909..1993 +
1691679797.198501-CDS-H-elongata_contig94575:1908..19931691679797.198501-CDS-H-elongata_contig94575:1908..1993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 1909..1993 +
1622931341.964782-CDS-H-elongata_contig94575:2170..22751622931341.964782-CDS-H-elongata_contig94575:2170..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 2171..2275 +
1691679797.213476-CDS-H-elongata_contig94575:2170..22751691679797.213476-CDS-H-elongata_contig94575:2170..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94575 2171..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94575.16879.1

>prot_H-elongata_contig94575.16879.1 ID=prot_H-elongata_contig94575.16879.1|Name=mRNA_H-elongata_contig94575.16879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
QISGSDRQNPKYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQN
KFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFF
LWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDKVRLIY*
back to top

mRNA from alignment at H-elongata_contig94575:967..2275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94575.16879.1 ID=mRNA_H-elongata_contig94575.16879.1|Name=mRNA_H-elongata_contig94575.16879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1309bp|location=Sequence derived from alignment at H-elongata_contig94575:967..2275+ (Himanthalia elongata Himel1 dioecious)
CAGATATCCGGGTCCGATCGCCAGAACCCCAAGTACATGGTGAACATCGC
CAGCATGGTGCAGTACATTCGGAGTAAGCTAGTCAAGTGCACCGTCAGAG
ATCGCTACGGCAAGGAGACCGCACGAATCATGGAGGTATTAATACAGTGT
GTCCGTAGCTTGCAGTGCGAATCACGCCACCGCGTCGGTAAGCGATAAGA
GACACTAGCGCCGGCCCATCAGCACCGTGACGTGAAACGTGAGGCGGGCA
TCAAGCAGCAGCAGCAGCAGCAGCCCGAAAATATCATCAGTACTGACTTG
GAGTACCAACTGTACTATTTTTTGCATGTTGACAGACAGAGGAGCGTTGT
AAGCGAATTGTCCACGCTACATCTGTCTTGAACAAGTTACCTTTGACTTA
ACCCAACCCAGGACTTGCATTCGTTGGAAGATGACGGCCGTGTGTGTGTG
TGTTGATTGATACGGCGGTTGCCGCTCGCGAACTCATGACAGATCCTGCT
ACAGAACAAGTTCTTGGAGCAGCAGCAGATCGGCGAGATGGCGATGCTTC
CCCCTGGCGATGCGCGAACCAGGCTGTACCGCCTTCTTCGAGACAGGTGT
CGCGTCTATGGAACTAGCTTTTGGATCGTTTTTTGGATAATGTCTGTATG
ATCGCGATAGGCGCCACCCCCTCCCCCCCCCTTCCCTCCAATTGGTGATG
CTGTAGGCTGTAAGCTGTAGGCCGGTCAGTGGACCATTCATCGAGAGGAG
ATGTTGCAACTTCAAATACAACTCTGAAAAGGAGTCCCGTGAGCGATTGG
TGGACCAGCACCCCAGCCCCGTATCGTGAAAGAAAGTAAATCTTTCGGTC
GCCTTATCCTCACAAAGGTCGAGCTCCCCGCACCCCCTCCTACCTAGTAA
TATCACCAATTCATATCACAATTTCTCTGTCGGCATATGCAGGATGGTGT
CCATGCAAGAGGTGCCCAAACGAGCAGATCGCAACCCCAACGCGACGTTT
TTCCTGTGGACCATCAAACACGACCAGGTCTGCACCCGTGTCTCTGCCAG
TGCTTTTGCGCCTTCGCGTCTTCGGTCGAGCCGCGCTGTTGACCGGTTGC
CTCGATTCGAAACATAAGCATCGCACTTCAGGTTGGAGTATCAAACTGCC
CCGACGACGTGCTCCGATTGTTCCTACTGCTCTTATTGTTTCTATTGTTG
TGAGCAGGTGAATCAAGTTGTAACAGATAGTCTGTACAAGGCCATGCTAA
ACATGCGTCTTCGAAGAAAGTTTGTATACTCGAACGACAAGGTGAGGTTA
ATATACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig94575:967..2275+

>mRNA_H-elongata_contig94575.16879.1 ID=mRNA_H-elongata_contig94575.16879.1|Name=mRNA_H-elongata_contig94575.16879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig94575:967..2275+ (Himanthalia elongata Himel1 dioecious)
CAGATATCCGGGTCCGATCGCCAGAACCCCAAGTACATGGTGAACATCGC
CAGCATGGTGCAGTACATTCGGAGTAAGCTAGTCAAGTGCACCGTCAGAG
ATCGCTACGGCAAGGAGACCGCACGAATCATGGAGCAGATATCCGGGTCC
GATCGCCAGAACCCCAAGTACATGGTGAACATCGCCAGCATGGTGCAGTA
CATTCGGAGTAAGCTAGTCAAGTGCACCGTCAGAGATCGCTACGGCAAGG
AGACCGCACGAATCATGGAGATCCTGCTACAGAACAAGTTCTTGGAGCAG
CAGCAGATCGGCGAGATGGCGATGCTTCCCCCTGGCGATGCGCGAACCAG
GCTGTACCGCCTTCTTCGAGACAGATCCTGCTACAGAACAAGTTCTTGGA
GCAGCAGCAGATCGGCGAGATGGCGATGCTTCCCCCTGGCGATGCGCGAA
CCAGGCTGTACCGCCTTCTTCGAGACAGGATGGTGTCCATGCAAGAGGTG
CCCAAACGAGCAGATCGCAACCCCAACGCGACGTTTTTCCTGTGGACCAT
CAAACACGACCAGGATGGTGTCCATGCAAGAGGTGCCCAAACGAGCAGAT
CGCAACCCCAACGCGACGTTTTTCCTGTGGACCATCAAACACGACCAGCA
GGTGAATCAAGTTGTAACAGATAGTCTGTACAAGGCCATGCTAAACATGC
GTCTTCGAAGAAAGTTTGTATACTCGAACGACAAGGTGAGGTTAATATAC
TGACAGGTGAATCAAGTTGTAACAGATAGTCTGTACAAGGCCATGCTAAA
CATGCGTCTTCGAAGAAAGTTTGTATACTCGAACGACAAGGTGAGGTTAA
TATACTGA
back to top