mRNA_H-elongata_contig9455.16875.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: D7FNT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT9_ECTSI) HSP 1 Score: 185 bits (470), Expect = 2.020e-52 Identity = 104/203 (51.23%), Postives = 132/203 (65.02%), Query Frame = 3
Query: 345 MPMDSKNPFSEDILDSMRTAIAILTTRLQREKPITRSEFERFESAVALIVEDALPKQELLTQAMPSRPPTNAVSTRPRAKPPAIADGSSVVDDDEDV--------NEGPRWDP-KGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKTGSYGNISAKEYVAFLGKNPTAGDDACESHKKDVAERHNEDFGRY 926
MP +++PFSE + + +R AI IL RLQREKP++R EFERFESAV +IVEDALP Q+L + P+ P + + A PP +A S V + + EGP WD K YGLP G RN+Y I+DM KMNPEEYQAALR KV+ RAQS RKTGSYGNI + EY+ FLGKNP GD+ + +++ V + EDF Y
Sbjct: 1 MPQVAESPFSESLQEELRVAIKILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPS---PASPASXEAAXXXAAAPPRLAVTQSPVPNADSXXXXXXXFETEGPEWDAEKVQYGLPMGARNTYDIDDMEKMNPEEYQAALREKVVERAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSY 200
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: A0A836C7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S9_9STRA) HSP 1 Score: 122 bits (305), Expect = 6.080e-28 Identity = 76/216 (35.19%), Postives = 117/216 (54.17%), Query Frame = 3
Query: 210 SYADKLREARAAKEAASRGRSPPLSPTAASDTIPAAIVAGGGGGAMPMDSKN-PFSEDILDSMRTAIAILTTRLQREKPITRSEFERFESAVALIVEDALPKQELLTQAMPSRPPTNAVSTRPRAKPPAIADGSSVVDDDEDVNEGPRWDPKGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKTGSYGNISAKEYVAFLGKNPT 854
SY ++L+ A+ AK A + +PP + A+ AA+ P+ + PF++++ + ++TAI +L+ RL+ P+ R EF+RFE A+ I++DA+P + + +EGP WD GYG+P GVRNSY I+ M M+P++YQAALR KV+ R ARKTG+YGN +A Y++FL K+PT
Sbjct: 41 SYMERLKAAQEAKAAKKQAAAPPAAVAPATXXXVAAVSE-------PLSAAAAPFTDEMQEHLQTAINLLSRRLKSGVPLNRPEFDRFEEAIDAIIKDAVPHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGME-SEGPAWDASKGYGMPVGVRNSYTIDGMDDMSPDDYQAALREKVLKRVTKARKTGNYGNRAANAYLSFLDKSPT 248
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: A0A7S0BY33_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY33_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.440e-12 Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 3
Query: 624 DEDVNEGPRWDPKGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKTGSYGNISAKEYVAFLG 842
D ++EGP + KGG GL SG +N+YVIE M +M+PEEY+ AL+ + AR R+TG++GN+S++ Y++ +G
Sbjct: 138 DMSLDEGPAYTGKGGMGLASGTKNTYVIEGMDEMSPEEYREALQGSISARQDKRRETGTFGNMSSENYLSAIG 210
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: A0A7S4NI70_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI70_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.870e-7 Identity = 61/206 (29.61%), Postives = 91/206 (44.17%), Query Frame = 3
Query: 345 MPMDSKNP--FSEDILDSMRTAIAILTTRLQREKP--ITRSEFERFESAVALIVEDALPKQELLTQAMPSRPPTNAVSTRPRAKP--------------------PAIADGSSVVDDDEDVNEGPRWDPKGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKT--GSYGNISAKEYVAFLGKNPTAGDDACESHK 884
+P D P F +D+LD + + L R+ +E P ++ E FE+A IVED K L S P A + PA D +V+ ++ EG ++ KGG G+ SG RN+YVI M +M EEYQ AL++ V R + R+ G+ GN + Y+ LG T+ + A E +
Sbjct: 119 LPEDDDFPTLFDDDVLDDFQQCLLKLEKRV-KEGPGSLSAEEVLEFEAATGRIVEDMHGK---LNGEATSAPEAKAAAXXXXXXXXXXXXXXXXXXXXXAVTTGVPADPDMPNVIPTSDE--EGKAYEGKGGMGMASGTRNTYVIPGMDEMTAEEYQVALQKSVSERQERRRREMRGTIGNRAGHSYLESLGWGGTSANLAAEDEE 318
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: A0A7S1UWT3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT3_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.960e-7 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 3
Query: 624 DEDVNEGPRWDPKGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKTGSYGNISAKEYVAFLGKNPTAGDDACESH----KKDVAERHNEDFG 920
D +EGP + G G P+G RN+YVI+ M +M+PEEY+ AL++ V+A+ + RK+G GN + Y+ L +GD H K D A N D G
Sbjct: 151 DTSNDEGPAY--TGTMGQPAGTRNTYVIDGMDEMSPEEYRQALQQSVVAKQRERRKSGMAGNYGSLSYMNSLSN---SGDTGSLKHEILEKDDYAGSANFDEG 248
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Match: A0A7R9Z5D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5D6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.330e-7 Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 3
Query: 612 VVDDDEDVNEGPRWDPKGGYGLPSGVRNSYVIEDMGKMNPEEYQAALRRKVIARAQSARKT--GSYGNISAKEYVAFLG 842
++D D EGP + KGG GL SG RN+++I M +M EEYQ AL++ V R + RK G+ GN + Y+ LG
Sbjct: 58 IIDTSND--EGPAYTGKGGLGLASGTRNTWIIPGMDEMTAEEYQQALQKSVSERQERRRKEMRGTVGNRAGNSYLDTLG 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9455.16875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9455.16875.1 >prot_H-elongata_contig9455.16875.1 ID=prot_H-elongata_contig9455.16875.1|Name=mRNA_H-elongata_contig9455.16875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp MRKSIVVAFGAAAAVLLPVGDGFISPRGVSHLALLGQGLEKRTTVTPVMSback to top mRNA from alignment at H-elongata_contig9455:5443..8483+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9455.16875.1 ID=mRNA_H-elongata_contig9455.16875.1|Name=mRNA_H-elongata_contig9455.16875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3041bp|location=Sequence derived from alignment at H-elongata_contig9455:5443..8483+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9455:5443..8483+ >mRNA_H-elongata_contig9455.16875.1 ID=mRNA_H-elongata_contig9455.16875.1|Name=mRNA_H-elongata_contig9455.16875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig9455:5443..8483+ (Himanthalia elongata Himel1 dioecious)back to top |