mRNA_H-elongata_contig9449.16872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9449.16872.1
Unique NamemRNA_H-elongata_contig9449.16872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.030e-31
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR+ F++ELV EG +
Sbjct:   70 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 176          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.270e-30
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELGS +EF  +PV  D T+ L    N +FS R KHIALR+ F++ELV EG +
Sbjct:  516 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 622          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.200e-29
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR+ F++ELV EG +
Sbjct:  295 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 401          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.650e-29
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR+ F++ELV EG +
Sbjct:  855 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 961          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.680e-27
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  + E++F  NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR+ F++ELV EG +
Sbjct: 1524 DNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 1630          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.710e-27
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DN K  SSYI+++    +SFK GLQSLTA ST+EAELV AA  +KE++FC NM+ ELG   EFRS P+ I+ T+ L V  N  FS R KH+ALR+ +++E+VKEG +
Sbjct:  549 DNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRI 654          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.270e-25
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRY 285
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR+
Sbjct:   41 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRF 135          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.480e-25
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            DNGK  SSYI+++     S K GLQSLTA ST+EAELV +A  +KE +FC NM+ ELG   EF S P+ ID T+ L V  N  FS   KH+ALR+ +++++VKEG +
Sbjct:  636 DNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRI 742          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.860e-25
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALR 282
            DNGK TSSY+ +L N  +SF+ GLQ LTA STMEAELV +A  +KE++FC NM+ ELG  +EF  +PV  D T+ L    N +FS R KHIALR
Sbjct:  172 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265          
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.350e-22
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   34 ILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
            +L +  ++FK GLQSLTAQSTMEAELV AA  +KE++FC N++ ELG  +EF  VP+  D T+ L    N + S R KHIALR+ F+++LV EG +
Sbjct:  224 MLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKI 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE2.030e-3155.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE6.270e-3056.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE1.200e-2955.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.650e-2955.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE3.680e-2753.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE6.710e-2754.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KCX7_9PHAE1.270e-2555.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE1.480e-2551.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNV2_9PHAE3.860e-2556.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE1.350e-2252.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9449contigH-elongata_contig9449:2442..2762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog1108849.XP_002556819.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20PDK@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.1289668-CDS-H-elongata_contig9449:2441..27621622931341.1289668-CDS-H-elongata_contig9449:2441..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9449 2442..2762 -
1691679796.7651818-CDS-H-elongata_contig9449:2441..27621691679796.7651818-CDS-H-elongata_contig9449:2441..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9449 2442..2762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9449.16872.1prot_H-elongata_contig9449.16872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9449 2442..2762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9449.16872.1

>prot_H-elongata_contig9449.16872.1 ID=prot_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFC
RNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQE
LVKEGPV
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mRNA from alignment at H-elongata_contig9449:2442..2762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9449.16872.1 ID=mRNA_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig9449:2442..2762- (Himanthalia elongata Himel1 dioecious)
GACAACGGCAAGCCTACCTCATCGTACATCGTGATACTCGTCAACGGGAC GATCAGCTTCAAAGTGGGACTCCAGAGTCTGACGGCTCAGTCGACTATGG AGGCGGAACTCGTGACAGCTGCCACACCAATAAAGGAGTCACTATTCTGC AGAAACATGATAATGGAGTTAGGTTCCATGGAGGAATTTCGAAGCGTTCC TGTCGACATCGACAAGACATCGGCGTTGCGCGTGGCGAGAAACGGGGCCT TTAGCCCAAGGGCGAAACACATCGCCCTGAGATACGTTTTCGTTCAAGAG TTAGTGAAGGAAGGGCCGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig9449:2442..2762-

>mRNA_H-elongata_contig9449.16872.1 ID=mRNA_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig9449:2442..2762- (Himanthalia elongata Himel1 dioecious)
GACAACGGCAAGCCTACCTCATCGTACATCGTGATACTCGTCAACGGGAC
GATCAGCTTCAAAGTGGGACTCCAGAGTCTGACGGCTCAGTCGACTATGG
AGGCGGAACTCGTGACAGCTGCCACACCAATAAAGGAGTCACTATTCTGC
AGAAACATGATAATGGAGTTAGGTTCCATGGAGGAATTTCGAAGCGTTCC
TGTCGACATCGACAAGACATCGGCGTTGCGCGTGGCGAGAAACGGGGCCT
TTAGCCCAAGGGCGAAACACATCGCCCTGAGATACGTTTTCGTTCAAGAG
TTAGTGAAGGAAGGGCCGGTCGACAACGGCAAGCCTACCTCATCGTACAT
CGTGATACTCGTCAACGGGACGATCAGCTTCAAAGTGGGACTCCAGAGTC
TGACGGCTCAGTCGACTATGGAGGCGGAACTCGTGACAGCTGCCACACCA
ATAAAGGAGTCACTATTCTGCAGAAACATGATAATGGAGTTAGGTTCCAT
GGAGGAATTTCGAAGCGTTCCTGTCGACATCGACAAGACATCGGCGTTGC
GCGTGGCGAGAAACGGGGCCTTTAGCCCAAGGGCGAAACACATCGCCCTG
AGATACGTTTTCGTTCAAGAGTTAGTGAAGGAAGGGCCGGTC
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