mRNA_H-elongata_contig94482.16870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig94482.16870.1
Unique Name	mRNA_H-elongata_contig94482.16870.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: D8LJA7_ECTSI (PITH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 6.870e-20
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            TVI+YLGFKGE TKFRHGVVECVYE++P AEDHK PS E GGRN+L
Sbjct:  180 TVITYLGFKGESTKFRHGVVECVYEAKPNAEDHKAPSGETGGRNIL 225

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A7S1XMI2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMI2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.070e-16
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGR 129
            TV+SY+GF+G GT  RHGVVE VYESRP AEDHKTP+DE+GG+
Sbjct:  111 TVLSYVGFRGVGTNTRHGVVEAVYESRPMAEDHKTPADEVGGQ 153

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: K3WYX1_GLOUD (PITH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYX1_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 2.240e-11
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1

Query:    7 ISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            I Y+G KGE  K+RHGVVE VYESRP+A DHK   + LGG N L
Sbjct:  176 IYYIGLKGESKKWRHGVVEAVYESRPQAADHKAKGETLGGSNTL 219

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A835ZD87_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD87_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.690e-10
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            TV+S+LGF+GE T FRHGVVE VYES+P A DHK    E    +V+
Sbjct:  176 TVLSFLGFRGESTNFRHGVVEAVYESKPMATDHKQLGGEFTNNSVV 221

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A1V9YPP9_9STRA (PITH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.950e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRN 132
            T I Y+G KGE  K++HGVVECVYESRP+  DHK P D LG  N
Sbjct:  168 TRIYYIGLKGESKKWKHGVVECVYESRPQMSDHKVP-DGLGALN 210

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A6G0WZT3_9STRA (PITH domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WZT3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.240e-9
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            T I Y+G KGE  K+RHGVVECVYESRP+  DHK P       N  
Sbjct:  166 TRIYYIGLKGESKKWRHGVVECVYESRPQLSDHKIPGATTSFSNTF 211

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: W7UAE5_9STRA (PITH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAE5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.550e-9
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDE 117
            T +SY+GFKGE T  RHGVVECVYES P+A DHK  + E
Sbjct:  178 TSVSYVGFKGEITSVRHGVVECVYESAPQAADHKQDAGE 216

[Close]

BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A2P4XRL0_9STRA (PITH domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRL0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.060e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            T I Y+G KGE  K+RHGVVECVYE+RP+  DHK   D +G  +++
Sbjct:  119 TKIYYIGLKGESKKWRHGVVECVYEARPQPADHKV-KDTIGSTSLI 163

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BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: A0A024UIB5_9STRA (PITH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIB5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-9
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDEL 120
            T + Y+G KGE  K+RHGVVECVYESRP+  DHK P   +
Sbjct:  166 TRLYYIGLKGESKKWRHGVVECVYESRPQFSDHKVPGSAM 205

[Close]

BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Match: G4YY60_PHYSP (PITH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY60_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 4.650e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL 138
            T I Y+G KGE  K+RHGVVECVYE+RP+  DHK   D +G  +++
Sbjct:  175 TKIYYIGLKGESKKWRHGVVECVYEARPQPSDHKV-KDTIGSTSLI 219

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot

BLAST of mRNA_H-elongata_contig94482.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
D8LJA7_ECTSI	6.870e-20	80.43	PITH domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A7S1XMI2_9STRA	7.070e-16	74.42	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
K3WYX1_GLOUD	2.240e-11	63.64	PITH domain-containing protein n=1 Tax=Globisporan...	[more]
A0A835ZD87_9STRA	1.690e-10	58.70	Galactose-binding domain-like protein n=1 Tax=Trib...	[more]
A0A1V9YPP9_9STRA	5.950e-10	63.64	PITH domain-containing protein n=1 Tax=Achlya hypo...	[more]
A0A6G0WZT3_9STRA	2.240e-9	56.52	PITH domain-containing protein n=2 Tax=Aphanomyces...	[more]
W7UAE5_9STRA	2.550e-9	66.67	PITH domain-containing protein n=2 Tax=Monodopsida...	[more]
A0A2P4XRL0_9STRA	3.060e-9	54.35	PITH domain-containing protein (Fragment) n=1 Tax=...	[more]
A0A024UIB5_9STRA	3.160e-9	60.00	PITH domain-containing protein n=1 Tax=Aphanomyces...	[more]
G4YY60_PHYSP	4.650e-9	54.35	PITH domain-containing protein n=1 Tax=Phytophthor...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig94482	contig	H-elongata_contig94482:4..515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	87.4
Seed ortholog evalue	1.9e-15
Seed eggNOG ortholog	2880.D8LJA7
Preferred name	PITHD1
KEGG ko	ko:K02906,ko:K15218
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:0051716
EggNOG free text desc.	cellular response to DNA damage stimulus
EggNOG OGs	KOG1730@1,KOG1730@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	PITH domain
Ec32 ortholog	Ec-02_005380.1
Exons	2
Model size	141
Cds size	141
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931340.99998-CDS-H-elongata_contig94482:3..45	1622931340.99998-CDS-H-elongata_contig94482:3..45	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94482 4..45 +
1691679796.7168095-CDS-H-elongata_contig94482:3..45	1691679796.7168095-CDS-H-elongata_contig94482:3..45	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94482 4..45 +
1622931341.0163455-CDS-H-elongata_contig94482:416..515	1622931341.0163455-CDS-H-elongata_contig94482:416..515	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94482 417..515 +
1691679796.731623-CDS-H-elongata_contig94482:416..515	1691679796.731623-CDS-H-elongata_contig94482:416..515	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94482 417..515 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig94482.16870.1	prot_H-elongata_contig94482.16870.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig94482 4..515 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig94482:4..515+
coding sequence from alignment at H-elongata_contig94482:4..515+

protein sequence of mRNA_H-elongata_contig94482.16870.1

>prot_H-elongata_contig94482.16870.1 ID=prot_H-elongata_contig94482.16870.1|Name=mRNA_H-elongata_contig94482.16870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
TVISYLGFKGEGTKFRHGVVECVYESRPKAEDHKTPSDELGGRNVL*

mRNA from alignment at H-elongata_contig94482:4..515+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig94482.16870.1 ID=mRNA_H-elongata_contig94482.16870.1|Name=mRNA_H-elongata_contig94482.16870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=512bp|location=Sequence derived from alignment at H-elongata_contig94482:4..515+ (Himanthalia elongata Himel1 dioecious)
ACCGTCATCTCGTACCTGGGGTTCAAGGGCGAGGGCACGAAGGTGACACA
GGATGCAACGCGGGCCCGCGTAGACCATTCTTTTCTCCGTTGGCGCTCCG
TAGCACCAGAAAACCCTCCATCAAGGAAGGGCAAAACACCTGAGACTTGG
GGCGTATTGCCGTCTAACCCCACTCCTTTACGGAGAGCACGGCGTGTATC
GGATACCCCTCGCCCCCCCCCTTGCCCCGCCTTATTCAGCGGGGTCAGTC
TAGAGGGGGGATTATCCGGTAGAAGTAGGAAGCGCGCGTGCTTTTGTCGC
ACAGCGGCGCCGATGTAAATCACTCTTTGGTAAGGTTGTGTCACGACCAC
CACGCACACACACACACACACACACTTTCCTTCCTCTTGTACATCTCTTT
TTCGTTCGAGCAGTTCCGACATGGCGTGGTAGAGTGCGTTTACGAGTCCC
GACCGAAGGCGGAAGATCACAAAACGCCGTCGGACGAACTTGGAGGAAGA
AATGTTCTCTAA

Coding sequence (CDS) from alignment at H-elongata_contig94482:4..515+

>mRNA_H-elongata_contig94482.16870.1 ID=mRNA_H-elongata_contig94482.16870.1|Name=mRNA_H-elongata_contig94482.16870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig94482:4..515+ (Himanthalia elongata Himel1 dioecious)
ACCGTCATCTCGTACCTGGGGTTCAAGGGCGAGGGCACGAAGACCGTCAT
CTCGTACCTGGGGTTCAAGGGCGAGGGCACGAAGTTCCGACATGGCGTGG
TAGAGTGCGTTTACGAGTCCCGACCGAAGGCGGAAGATCACAAAACGCCG
TCGGACGAACTTGGAGGAAGAAATGTTCTCTAATTCCGACATGGCGTGGT
AGAGTGCGTTTACGAGTCCCGACCGAAGGCGGAAGATCACAAAACGCCGT
CGGACGAACTTGGAGGAAGAAATGTTCTCTAA