prot_H-elongata_contig94075.16841.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94075.16841.1
Unique Nameprot_H-elongata_contig94075.16841.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.770e-104
Identity = 148/198 (74.75%), Postives = 168/198 (84.85%), Query Frame = 0
Query:    5 FAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKVHKLTDPSPS 202
            FAQLAQ+E H RA+TS + TASNGMLWS+S D TIRIWNT +N C H IT+DNGGH   V  L +GQSAAEGTL +YVISGSKDGT+GVFQ ADG LTYKHKCG G+S +A FDPTPG SALLLVGYEDGTIAVRNFPEFALAFE+HP + ++GH+ PV ALLPFNNPSIDD YFLSA E+G+M+CW VHKLTDPSP+
Sbjct:  245 FAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDGYFLSAGEDGTMMCWNVHKLTDPSPA 442          
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.860e-28
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 0
Query:   11 MEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKV 193
            +E HVR VT      +  MLWSAS D T+R+W+T++  C  II    G      VT + G  + EG   +Y+++GS D +V                    + L  F  +P +  LLL+G +DG+IA+R+FP F+LAFEL     ++GH TPVRALLP   P   + YF+S AE+G M+ W++
Sbjct:  227 LEGHVRGVTCLCMVGN--MLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQGEYMVTGSADKSV--------------------TALTCFKTSP-SGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPG-PNLYFMSGAEDGKMMMWQM 385          
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7S3HF87_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF87_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.960e-16
Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 0
Query:    2 EGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGG--HSMAVVTL-VLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVL-TYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKV 193
            +G F Q+  +E H+RAVT+ L   +  +LWS SVDST+R+W+ +S  C   +   NGG  H+ AV  L  +  + AE     ++ SG+ D  V ++     +L T  H  G  +++L  F  T G   +LL+G  DGTI VR+     + F L      I H   + +++      +  S F + +++G ++ WKV
Sbjct:  244 KGGFEQIMVLEGHIRAVTTVLLNGA--LLWSGSVDSTLRVWDLASGKCLATLAAANGGPGHTQAVTCLEFVPNTGAE----PFIASGAADNAVKLWGTTGSLLHTVTH--GAMVTSLKAFKDTLGGIQVLLIGLLDGTIHVRSCMSMKILFTLD---ASICHTKAIWSIV-----DLGQSCFGAGSDDGQIVVWKV 423          
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7R9WQC1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQC1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.020e-11
Identity = 66/207 (31.88%), Postives = 98/207 (47.34%), Query Frame = 0
Query:    2 EGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIIT------QDNG--------GHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNF------PEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSM 188
            +G F     +  H R VT  L  A N +LWS+S+D +IRIW+ +S  C+H IT      Q +G        GH  AV  L+   S + GT   ++++ S DG +  +  + G        G+G+ T+A+       + +LL+G E G I VRN       P F L   L  + + +GH  PV+AL     PS   S F S   +G +
Sbjct:   59 KGGFVLSKTLAGHAREVTG-LAVAEN-VLWSSSIDGSIRIWDLASGNCQHAITNSGTNAQQSGQPPAGGGQGHKDAVTCLIPFPSPS-GT---FILTSSLDGDIKAWNGSTGQCVASESHGEGVVTIAMAADQKN-NQVLLIGLESGNIMVRNLLQTPNMPAFTLIMMLSLQYS-VGHRGPVKALA--QGPS---STFYSGGGDGKV 252          
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7S0A247_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A247_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-6
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 0
Query:    4 AFAQLAQMEDHVRAVTSF--LYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQD---------NGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDG 89
            AF     +  HVRAVT    + +AS  MLWS SVD TIR+W+ ++  C+H+I+ +         + GH  A+ +L+  +S   G   ++V+SGS DG
Sbjct:  236 AFTLRKTLAGHVRAVTGMTVVSSASLNMLWSCSVDETIRLWDLNTGDCKHLISSETTKNQQTGQSAGHQAAITSLINFESKGMG---NFVLSGSFDG 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJM7_ECTSI2.770e-10474.75C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YKE1_9STRA9.860e-2838.25WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S3HF87_9STRA5.960e-1631.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9WQC1_9STRA3.020e-1131.88Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0A247_9STRA1.450e-637.11Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 4..43
e-value: 0.0034
score: 26.6
coord: 149..192
e-value: 110.0
score: 4.0
coord: 46..95
e-value: 3.7
score: 13.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 11..52
score: 11.812
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..203
e-value: 8.3E-22
score: 79.4
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 59..194
NoneNo IPR availablePANTHERPTHR44129:SF5UDP-GALACTOSE:FUCOSIDE ALPHA-3-GALACTOSYLTRANSFERASEcoord: 59..194
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 9..96
NoneNo IPR availablePANTHERPTHR44129:SF5UDP-GALACTOSE:FUCOSIDE ALPHA-3-GALACTOSYLTRANSFERASEcoord: 9..96
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 30..44
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 11..104
score: 13.106
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 8..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94075contigH-elongata_contig94075:28..2319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94075.16841.1mRNA_H-elongata_contig94075.16841.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94075 28..2319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94075.16841.1 ID=prot_H-elongata_contig94075.16841.1|Name=mRNA_H-elongata_contig94075.16841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MEGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCE
HIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGV
LTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFEL
HPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKVHKLTDPS
PSARS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf