prot_H-elongata_contig94068.16840.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94068.16840.1
Unique Nameprot_H-elongata_contig94068.16840.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94068.16840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 15..48
e-value: 1.4E-7
score: 29.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 8..59
e-value: 6.1E-9
score: 35.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 12..46
score: 11.071
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..61
e-value: 5.4E-15
score: 57.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94068contigH-elongata_contig94068:221..418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94068.16840.1mRNA_H-elongata_contig94068.16840.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94068 197..418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94068.16840.1 ID=prot_H-elongata_contig94068.16840.1|Name=mRNA_H-elongata_contig94068.16840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MELMRSSCLEPDVRTYTAMLAGCKKGSDWIRAESIVSEMRAAGVKPNTRT
CRAMLKVCVCVLERG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf