mRNA_H-elongata_contig122042.1684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122042.1684.1
Unique NamemRNA_H-elongata_contig122042.1684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: D7G1L6_ECTSI (PEPD_MOUSE Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 5.340e-56
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 1
Query:   97 ATATKEGLRPGHHPLDMPPL--HPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            ATA +    P   P +MP L  HPTVG+YPVDY+MH+++R K++ R+R T GV  R VLL RGGL+A RDETDHEP+FRQESTFHYLFGVREP+CL  +DL TGKA ++IPRLPAEYA WMG I+PP HFQ
Sbjct:   34 ATAKRSKKNP-RVPSEMPALELHPTVGEYPVDYTMHAENRGKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPNCLATIDLETGKATLFIPRLPAEYATWMGDILPPKHFQ 163          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A6H5KDB9_9PHAE (AMP_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB9_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.400e-52
Identity = 88/133 (66.17%), Postives = 106/133 (79.70%), Query Frame = 1
Query:   91 AAATATKEGLRPGHHPLDMPPL--HPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            AAA  +K+  R    P +MP L  HPTVG+YPVDY+MH+++RAK++ R+R T GV  R VLL RGGL+A RDETDHEP+FRQESTFHYLFGVREPDCL  +DL TGKA ++IPRLPA YA WMG+I+PP HFQ
Sbjct:   34 AAAKRSKKNPR---VPSEMPALELHPTVGEYPVDYTMHAENRAKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAVYATWMGEILPPKHFQ 163          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A7S1CA66_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA66_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.320e-36
Identity = 61/103 (59.22%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  181 VDYSMHSQHRAKLVERMRATQG--VPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            +D+S+H+++RA +V+ ++   G  VP ++V+L +GG++  RD+TDHEPLFRQES FHYLFGVREPDC GA+D+ATG A ++IPRLP  YA WMG I+PP HFQ
Sbjct:   25 IDFSLHARNRAAVVDNLKRFGGATVPEKAVILVQGGVAETRDDTDHEPLFRQESNFHYLFGVREPDCFGAIDVATGAATLFIPRLPDVYATWMGDILPPAHFQ 127          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A388JTW8_CHABU (AMP_N domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTW8_CHABU)

HSP 1 Score: 117 bits (294), Expect = 1.120e-29
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  169 GDYPVDYSMHSQHRAKLV----ERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            G +PV  SMH+ +R +LV    +R++ + G P  SV+L  GG+S  R  TDHEPLFRQES F YLFGV+EP   GA+DLATGK  +++P LP +YA+WMG I  P HF+
Sbjct:   31 GTHPVPMSMHAGNRKRLVTKMLKRIQESGGSPRNSVVLLEGGVSETRYCTDHEPLFRQESYFSYLFGVKEPGFYGALDLATGKCFLFMPLLPKDYAVWMGTIHGPEHFK 139          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A7S1H3N2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3N2_HEMAN)

HSP 1 Score: 114 bits (284), Expect = 3.310e-29
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  181 VDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKI 462
            V  SMH+Q+R +LV  M        + V L  GG S  RD++DHE +FRQES FHYLFGV EPDCLGAVD+  G A ++IPRLPA+YA+WMG I
Sbjct:   16 VPRSMHAQNRQRLVSLMNKQS---CKGVALLLGGTSKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAVDVRNGAATLFIPRLPADYAMWMGPI 106          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A1Y1HWQ9_KLENI (Metallopeptidase M24 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ9_KLENI)

HSP 1 Score: 120 bits (302), Expect = 5.090e-29
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  139 LDMPPLHPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARS--VLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            +  P   P    Y V  S+H+++RAKLV+ +  T     +   V+L +GG    R +TDHEPLFRQES F YLFGV E    GAVD+ATGK++++ PRLP+EYAIWMGKI PP HF+
Sbjct:   21 IKKPVNQPRFEKYVVPMSLHAENRAKLVKALGETLSAAGKENGVVLLQGGEQQTRYDTDHEPLFRQESYFAYLFGVTEAGFYGAVDVATGKSILFAPRLPSEYAIWMGKIQPPQHFK 137          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: H2ZPY4_CIOSA (AMP_N domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZPY4_CIOSA)

HSP 1 Score: 116 bits (291), Expect = 1.540e-28
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  178 PVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            PV  S+ + +R +L ++++A + VP  S++L +GG   Q+D TD +  FRQES F + FGV EPDC G +++A+GKAV++IP+LP EY +WMG+I PP HFQ
Sbjct:    1 PVSMSLFANNRKRLCDKLKAKK-VPENSIVLLQGGQQTQQDSTDRDITFRQESYFQWCFGVTEPDCFGTIEVASGKAVLFIPKLPKEYQVWMGEIYPPSHFQ 101          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: L8GWD9_ACACA (Peptidase D, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWD9_ACACA)

HSP 1 Score: 118 bits (295), Expect = 3.870e-28
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  175 YPVDYSMHSQHRAKLVERM-RATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKI 462
            +PV  +M  ++R +L+ R  ++ +G P  SV+L RGG +  R ETDHE LFRQES FH+ FGV +PDC GA+DL   +A+++IPRLPAEYA+WMGKI
Sbjct:   14 HPVPMAMFRENRERLIARFEKSAEGTPEGSVVLLRGGKAKMRHETDHEHLFRQESFFHWTFGVADPDCFGAIDLKRRRAILFIPRLPAEYAVWMGKI 110          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A3M6TRW1_POCDA (AMP_N domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TRW1_POCDA)

HSP 1 Score: 112 bits (280), Expect = 3.910e-28
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  181 VDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
            +  S+H+ +R +L ER++  +GVP+ +++L +GG  +QR  TD + +FRQES FH+ FGV E DC GAV++ T  A++++PRLP EYAIWMGKI    HFQ
Sbjct:   62 IPVSLHATNRKRLCERLKKIEGVPSGAIVLLQGGEQSQRYCTDTDVVFRQESYFHWTFGVLEADCFGAVEVDTACAILFVPRLPPEYAIWMGKIHSQEHFQ 162          
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A058ZCZ0_FONAL (AMP_N domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZCZ0_FONAL)

HSP 1 Score: 118 bits (296), Expect = 4.070e-28
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  166 VGDYPVDYS-MHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHF 480
             G + +D + +H  HRAKL ERM+    V A +VL   GG+ A RD TDHEPLFRQES FHYLFGVRE   +GAV L TG+++++ PRLP  YA+WMG I PP HF
Sbjct:   19 AGTFEIDLAALHGAHRAKLAERMQ----VDAWAVLA--GGVQATRDATDHEPLFRQESFFHYLFGVREAGFMGAVHLKTGRSLLFAPRLPEAYAVWMGTIHPPSHF 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1L6_ECTSI5.340e-5665.65PEPD_MOUSE Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectoc... [more]
A0A6H5KDB9_9PHAE1.400e-5266.17AMP_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1CA66_9STRA1.320e-3659.22Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A388JTW8_CHABU1.120e-2953.21AMP_N domain-containing protein n=1 Tax=Chara brau... [more]
A0A7S1H3N2_HEMAN3.310e-2957.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Y1HWQ9_KLENI5.090e-2951.28Metallopeptidase M24 family protein n=1 Tax=Klebso... [more]
H2ZPY4_CIOSA1.540e-2849.02AMP_N domain-containing protein n=1 Tax=Ciona savi... [more]
L8GWD9_ACACA3.870e-2854.64Peptidase D, putative n=1 Tax=Acanthamoeba castell... [more]
A0A3M6TRW1_POCDA3.910e-2849.50AMP_N domain-containing protein n=1 Tax=Pocillopor... [more]
A0A058ZCZ0_FONAL4.070e-2856.60AMP_N domain-containing protein n=1 Tax=Fonticula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122042contigH-elongata_contig122042:199..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue8.7e-44
Seed eggNOG ortholog2880.D7G1L6
Preferred namePEPP
KEGG koko:K14213
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0016805,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0006@1,KOG2737@2759
Ec32 ortholog descriptionAminopeptidase P, N-terminal
Ec32 orthologEc-26_000900.1
EC3.4.13.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size480
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.3243399-CDS-H-elongata_contig122042:198..6781622929718.3243399-CDS-H-elongata_contig122042:198..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122042 199..678 -
1691679131.0194957-CDS-H-elongata_contig122042:198..6781691679131.0194957-CDS-H-elongata_contig122042:198..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122042 199..678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.3402405-UTR-H-elongata_contig122042:678..6931622929718.3402405-UTR-H-elongata_contig122042:678..693Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122042 679..693 -
1691679131.0410175-UTR-H-elongata_contig122042:678..6931691679131.0410175-UTR-H-elongata_contig122042:678..693Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122042 679..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122042.1684.1prot_H-elongata_contig122042.1684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122042 199..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122042.1684.1

>prot_H-elongata_contig122042.1684.1 ID=prot_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MVTSGDAGSTSISLLSPAPSTAFLPAAATATKEGLRPGHHPLDMPPLHPT
VGDYPVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHE
PLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIM
PPGHFQVPM*
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mRNA from alignment at H-elongata_contig122042:199..693-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122042.1684.1 ID=mRNA_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig122042:199..693- (Himanthalia elongata Himel1 dioecious)
TTACCAACAACATCAATGGTGACTTCGGGTGATGCAGGTTCTACCTCGAT ATCACTTCTGTCTCCAGCCCCGTCGACCGCGTTTCTGCCAGCAGCAGCGA CAGCAACGAAGGAAGGCCTCCGGCCAGGGCATCACCCGTTAGACATGCCT CCCTTGCACCCTACTGTCGGGGATTACCCTGTTGACTATTCCATGCACTC CCAGCACCGAGCCAAGCTTGTCGAGAGGATGCGGGCGACTCAAGGGGTGC CCGCCCGAAGCGTGCTTCTTTTTCGCGGAGGCTTGTCAGCGCAGCGAGAC GAGACGGACCACGAGCCCTTGTTTCGTCAGGAGTCGACGTTCCACTACCT ATTCGGGGTGCGAGAGCCCGATTGTTTAGGCGCGGTGGATCTCGCCACGG GCAAGGCCGTCATTTATATACCAAGGCTACCAGCGGAGTACGCAATCTGG ATGGGCAAGATCATGCCGCCCGGACACTTTCAGGTACCTATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig122042:199..693-

>mRNA_H-elongata_contig122042.1684.1 ID=mRNA_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig122042:199..693- (Himanthalia elongata Himel1 dioecious)
ATGGTGACTTCGGGTGATGCAGGTTCTACCTCGATATCACTTCTGTCTCC
AGCCCCGTCGACCGCGTTTCTGCCAGCAGCAGCGACAGCAACGAAGGAAG
GCCTCCGGCCAGGGCATCACCCGTTAGACATGCCTCCCTTGCACCCTACT
GTCGGGGATTACCCTGTTGACTATTCCATGCACTCCCAGCACCGAGCCAA
GCTTGTCGAGAGGATGCGGGCGACTCAAGGGGTGCCCGCCCGAAGCGTGC
TTCTTTTTCGCGGAGGCTTGTCAGCGCAGCGAGACGAGACGGACCACGAG
CCCTTGTTTCGTCAGGAGTCGACGTTCCACTACCTATTCGGGGTGCGAGA
GCCCGATTGTTTAGGCGCGGTGGATCTCGCCACGGGCAAGGCCGTCATTT
ATATACCAAGGCTACCAGCGGAGTACGCAATCTGGATGGGCAAGATCATG
CCGCCCGGACACTTTCAGGTACCTATGTAAATGGTGACTTCGGGTGATGC
AGGTTCTACCTCGATATCACTTCTGTCTCCAGCCCCGTCGACCGCGTTTC
TGCCAGCAGCAGCGACAGCAACGAAGGAAGGCCTCCGGCCAGGGCATCAC
CCGTTAGACATGCCTCCCTTGCACCCTACTGTCGGGGATTACCCTGTTGA
CTATTCCATGCACTCCCAGCACCGAGCCAAGCTTGTCGAGAGGATGCGGG
CGACTCAAGGGGTGCCCGCCCGAAGCGTGCTTCTTTTTCGCGGAGGCTTG
TCAGCGCAGCGAGACGAGACGGACCACGAGCCCTTGTTTCGTCAGGAGTC
GACGTTCCACTACCTATTCGGGGTGCGAGAGCCCGATTGTTTAGGCGCGG
TGGATCTCGCCACGGGCAAGGCCGTCATTTATATACCAAGGCTACCAGCG
GAGTACGCAATCTGGATGGGCAAGATCATGCCGCCCGGACACTTTCAGGT
ACCTATGTAA
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