mRNA_H-elongata_contig94068.16840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94068.16840.1
Unique NamemRNA_H-elongata_contig94068.16840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94068.16840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94068contigH-elongata_contig94068:197..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931337.1810553-UTR-H-elongata_contig94068:196..2201622931337.1810553-UTR-H-elongata_contig94068:196..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94068 197..220 +
1691679795.375658-UTR-H-elongata_contig94068:196..2201691679795.375658-UTR-H-elongata_contig94068:196..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94068 197..220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931337.2024488-CDS-H-elongata_contig94068:220..4181622931337.2024488-CDS-H-elongata_contig94068:220..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94068 221..418 +
1691679795.384591-CDS-H-elongata_contig94068:220..4181691679795.384591-CDS-H-elongata_contig94068:220..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94068 221..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94068.16840.1prot_H-elongata_contig94068.16840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94068 221..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94068.16840.1

>prot_H-elongata_contig94068.16840.1 ID=prot_H-elongata_contig94068.16840.1|Name=mRNA_H-elongata_contig94068.16840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MELMRSSCLEPDVRTYTAMLAGCKKGSDWIRAESIVSEMRAAGVKPNTRT
CRAMLKVCVCVLERG*
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mRNA from alignment at H-elongata_contig94068:197..418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94068.16840.1 ID=mRNA_H-elongata_contig94068.16840.1|Name=mRNA_H-elongata_contig94068.16840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig94068:197..418+ (Himanthalia elongata Himel1 dioecious)
CAGTTCGATGAGGTATCCAAGATTATGGAGCTCATGCGATCCTCCTGCCT
GGAGCCCGATGTGAGGACCTACACGGCGATGCTGGCCGGCTGCAAGAAGG
GCTCCGACTGGATAAGAGCGGAGTCCATCGTGTCCGAGATGCGGGCGGCC
GGTGTCAAGCCCAACACGAGAACCTGTCGCGCCATGTTGAAGGTGTGTGT
GTGTGTGTTGGAGAGGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig94068:197..418+

>mRNA_H-elongata_contig94068.16840.1 ID=mRNA_H-elongata_contig94068.16840.1|Name=mRNA_H-elongata_contig94068.16840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig94068:197..418+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTCATGCGATCCTCCTGCCTGGAGCCCGATGTGAGGACCTACAC
GGCGATGCTGGCCGGCTGCAAGAAGGGCTCCGACTGGATAAGAGCGGAGT
CCATCGTGTCCGAGATGCGGGCGGCCGGTGTCAAGCCCAACACGAGAACC
TGTCGCGCCATGTTGAAGGTGTGTGTGTGTGTGTTGGAGAGGGGGTAGAT
GGAGCTCATGCGATCCTCCTGCCTGGAGCCCGATGTGAGGACCTACACGG
CGATGCTGGCCGGCTGCAAGAAGGGCTCCGACTGGATAAGAGCGGAGTCC
ATCGTGTCCGAGATGCGGGCGGCCGGTGTCAAGCCCAACACGAGAACCTG
TCGCGCCATGTTGAAGGTGTGTGTGTGTGTGTTGGAGAGGGGGTAG
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