mRNA_H-elongata_contig94024.16835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94024.16835.1
Unique NamemRNA_H-elongata_contig94024.16835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: D7FQT3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT3_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 8.390e-125
Identity = 182/198 (91.92%), Postives = 191/198 (96.46%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMAV YDGGVIMGADSRTSTGTYVANRVSDKITSLHD+IYACRSGSAADTQA++DYVRYFLASHS ELGRLP VKTAA + RGLCY NKDRLLAGMIIAGWDPVDGG+VYEIPLGGT++KQKFAIGGSGSTYIYGHVD+AFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVS EYIPGD+LPFGP
Sbjct:   21 TTIMAVQYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAITDYVRYFLASHSVELGRLPLVKTAAKMARGLCYNNKDRLLAGMIIAGWDPVDGGTVYEIPLGGTMMKQKFAIGGSGSTYIYGHVDAAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSCEYIPGDQLPFGP 218          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A836CD01_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD01_9STRA)

HSP 1 Score: 345 bits (884), Expect = 1.410e-115
Identity = 168/198 (84.85%), Postives = 185/198 (93.43%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMA  YDGGVIMGADSRTSTGTYVANRVSDKIT+LHDYIYACRSGSAADTQA+SDYVRYFL+SHSAE+GRLP VKTAA+L R +CY NKD LLAGMIIAGWDPV GGSVYEIPLGGT++KQ+FAIGGSGSTYIYGHVD+A+KE MTKEEA+ FVRKAI+HAMARDGSSGGVIR+V IDK GV REYIPG++LP+GP
Sbjct:   19 TTIMACMYDGGVIMGADSRTSTGTYVANRVSDKITALHDYIYACRSGSAADTQAISDYVRYFLSSHSAEVGRLPTVKTAANLARRICYNNKDNLLAGMIIAGWDPVHGGSVYEIPLGGTIMKQQFAIGGSGSTYIYGHVDAAYKEGMTKEEAKIFVRKAIAHAMARDGSSGGVIRIVTIDKDGVEREYIPGNELPYGP 216          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: W7TIP5_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIP5_9STRA)

HSP 1 Score: 321 bits (822), Expect = 4.030e-106
Identity = 155/198 (78.28%), Postives = 177/198 (89.39%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMAV +DGGV++GADSRTSTGTYVANRVSDK+T+LH +IY CRSGSAADTQA++DYVRYFLASH+ +LGR PAV TAA L+  L Y+NKD LLAG+II GWDP DGG VY + LGGT+ +QKF+IGGSGSTYIYGHVD AFKENMT+EE Q FV+KAISHAMARDGSSGGVIRMV IDK+GVSRE+IPGDKLP+GP
Sbjct:   23 TTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S3M7L5_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7L5_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.550e-99
Identity = 143/198 (72.22%), Postives = 174/198 (87.88%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMAVT+DGGV++GADSRTSTG+YVANRVSDKI  +HDY++ACRSGSAADTQAVSDYV+Y++ SHS ELGRLP VKT A+L+R +CY NKDR+ AGMI  GWDP +GG VYEIPLGGT+++QKFA+GGSGS+YIYG VDS ++E M+KEE + FV+ AISHAMARDGSSGGVIR+VVID++G+ +E + GD LPF P
Sbjct:   18 TTIMAVTFDGGVVLGADSRTSTGSYVANRVSDKIVPIHDYVWACRSGSAADTQAVSDYVKYYINSHSTELGRLPRVKTCANLMRKICYNNKDRMQAGMICGGWDPYEGGQVYEIPLGGTMMQQKFALGGSGSSYIYGLVDSTYREGMSKEECKVFVKTAISHAMARDGSSGGVIRLVVIDQSGIEKEVVLGDNLPFKP 215          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2WTH2_9STRA (Proteasome endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTH2_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.020e-98
Identity = 139/198 (70.20%), Postives = 173/198 (87.37%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMA  +DGGV++GADSR STGTY+ANRVSDK+ +LHD I+ CRSGSAADTQA+SDYVRY+L+SH+ E+ R P VKTAA+L R + Y+NKD LLAG+I+ GWDPV+GGSVY IPLGGT++K  FAIGGSGSTYIYGHVD+ +KE M++EEAQ FV+K+I+HAMARDGSSGG+IR+V +D  GV R+Y+PGD+LP+GP
Sbjct:   22 TTIMACCFDGGVVLGADSRVSTGTYIANRVSDKVAALHDTIFMCRSGSAADTQAISDYVRYWLSSHATEVNRPPTVKTAATLARRIAYENKDALLAGVIVGGWDPVEGGSVYVIPLGGTLMKMPFAIGGSGSTYIYGHVDAQYKEGMSREEAQAFVKKSIAHAMARDGSSGGIIRLVTVDANGVERDYVPGDQLPYGP 219          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: F0W411_9STRA (Proteasome subunit beta n=2 Tax=Albugo TaxID=65356 RepID=F0W411_9STRA)

HSP 1 Score: 292 bits (747), Expect = 7.860e-95
Identity = 139/196 (70.92%), Postives = 168/196 (85.71%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
            T+I+AV +DGGV++GADSRTSTG YVANRVSDK+T LHD IY CRSGSAADTQA+SDYVRYFL+SHS ++G+LP V TAA+L R LCY NKDRLLAG+I+AGWDPV GG VY IP+GG ++KQ FAIGGSGSTYIYG VD+A++ +MT+EE Q FV+K ++HAMARDGSSGGVIR V I K  V+RE+  G++LPF
Sbjct:   19 TSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDSVTREFTSGEQLPF 214          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2V2Y9_9STRA (Proteasome endopeptidase complex n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y9_9STRA)

HSP 1 Score: 291 bits (746), Expect = 3.090e-94
Identity = 139/198 (70.20%), Postives = 166/198 (83.84%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMA  Y+GGV++GADSRTSTGTYVANR S+K+T L D I+ CRSGSAADT+AV+DYV+YFL SHS E+G  P V++AA LVR LCY+NKD L+AGMII GWDPVDGG VY +PLGGT+++Q  AIGGSGSTYIYGHVD+A++  M+KEE   FV KAISHAMARDGSSGGVIR+V ID  G+ ++Y  GDKLP+GP
Sbjct:   49 TTIMACEYEGGVVVGADSRTSTGTYVANRASNKVTYLADNIFGCRSGSAADTEAVTDYVKYFLESHSTEIGGPPRVRSAAHLVRKLCYENKDALMAGMIIGGWDPVDGGQVYSVPLGGTLMRQPVAIGGSGSTYIYGHVDAAYRPGMSKEECHAFVAKAISHAMARDGSSGGVIRLVSIDANGIEKQYFAGDKLPYGP 246          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2HYA4_9STRA (Proteasome subunit beta n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYA4_9STRA)

HSP 1 Score: 291 bits (744), Expect = 4.130e-94
Identity = 140/198 (70.71%), Postives = 167/198 (84.34%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
            TTIMA+ ++GGV+MGADSR STG+YVANRVSDK+  LHD I+ CRSGSAADTQA++DYV+++LAS + E GR P VKTAA L+R LCY+NKDRLLAG+I+ GWDPVDGGSVY IPLGGT IK  FAIGGSGSTYIYG  DS FKENMT++EA   V+KAISHAMARDGSSGG+IR V + +    RE+IPG++LP+GP
Sbjct:   34 TTIMAIPFEGGVVMGADSRVSTGSYVANRVSDKVAQLHDRIWCCRSGSAADTQALTDYVKHYLASLAIETGRRPTVKTAAHLMRRLCYENKDRLLAGVIVGGWDPVDGGSVYNIPLGGTCIKMPFAIGGSGSTYIYGLTDSEFKENMTRDEALTLVKKAISHAMARDGSSGGIIRTVTVTEESNDREFIPGNQLPYGP 231          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A2D4BVR2_PYTIN (Proteasome subunit beta n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BVR2_PYTIN)

HSP 1 Score: 290 bits (742), Expect = 4.640e-94
Identity = 140/196 (71.43%), Postives = 168/196 (85.71%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
            T+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD IY CRSGSAADTQA+SDYVR+FLASH+ +LGR P V TAA+L R LCY NKDRLLAG+I+AG DPV GG V+ IP+GG +++Q FAIGGSGSTYIYG+VDSA++ NMTKEE Q FV+KA++HAMARDGSSGGVIRMV I    V RE++ G +LPF
Sbjct:   20 TSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIYCCRSGSAADTQALSDYVRHFLASHAMDLGRRPKVHTAANLFRSLCYNNKDRLLAGIIVAGVDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGYVDSAYRPNMTKEECQSFVKKALAHAMARDGSSGGVIRMVTITADDVVREFVSGTELPF 215          
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: K3WDU5_GLOUD (Proteasome subunit beta n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WDU5_GLOUD)

HSP 1 Score: 290 bits (741), Expect = 6.800e-94
Identity = 137/196 (69.90%), Postives = 167/196 (85.20%), Query Frame = 1
Query:   58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
            T+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD I+ CRSGSAADTQA+SDYV+YFL+SH+ +LGRLP V TAA+L R LCY NKDRLLAG+I+AGWDP+ GG V+ +P+GG +++Q FAIGGSGSTYIYG VD+ +K  MTKEE Q+FV+KA++HAMARDGSSGGVIR V I K  V RE+  GD LPF
Sbjct:   21 TSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIFCCRSGSAADTQALSDYVKYFLSSHAVDLGRLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPIKGGQVFSVPIGGAMVEQDFAIGGSGSTYIYGLVDAEYKPGMTKEECQKFVKKALAHAMARDGSSGGVIRTVTITKDEVVREFTSGDALPF 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT3_ECTSI8.390e-12591.92Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CD01_9STRA1.410e-11584.85Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
W7TIP5_9STRA4.030e-10678.28Proteasome subunit beta n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S3M7L5_9STRA1.550e-9972.22Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]
A0A7S2WTH2_9STRA1.020e-9870.20Proteasome endopeptidase complex n=1 Tax=Rhizochro... [more]
F0W411_9STRA7.860e-9570.92Proteasome subunit beta n=2 Tax=Albugo TaxID=65356... [more]
A0A7S2V2Y9_9STRA3.090e-9470.20Proteasome endopeptidase complex n=1 Tax=Fibrocaps... [more]
A0A7S2HYA4_9STRA4.130e-9470.71Proteasome subunit beta n=1 Tax=Helicotheca tamesi... [more]
A0A2D4BVR2_PYTIN4.640e-9471.43Proteasome subunit beta n=2 Tax=Pythium TaxID=4797... [more]
K3WDU5_GLOUD6.800e-9469.90Proteasome subunit beta n=2 Tax=Pythiaceae TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94024contigH-elongata_contig94024:431..2529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue5.2e-99
Seed eggNOG ortholog2880.D7FQT3
Preferred namePBA1
KEGG koko:K02738,ko:K11507
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0019774,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Proteasome subunit beta
EggNOG OGsKOG0174@1,KOG0174@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase T1A, proteasome beta-subunit
Ec32 orthologEc-16_000630.1
Exons5
Model size1213
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.5846624-UTR-H-elongata_contig94024:430..9891622931336.5846624-UTR-H-elongata_contig94024:430..989Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 431..989 -
1691679795.0770087-UTR-H-elongata_contig94024:430..9891691679795.0770087-UTR-H-elongata_contig94024:430..989Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 431..989 -
1622931336.656451-UTR-H-elongata_contig94024:2275..22841622931336.656451-UTR-H-elongata_contig94024:2275..2284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 2276..2284 -
1691679795.1499157-UTR-H-elongata_contig94024:2275..22841691679795.1499157-UTR-H-elongata_contig94024:2275..2284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 2276..2284 -
1622931336.6710036-UTR-H-elongata_contig94024:2472..25291622931336.6710036-UTR-H-elongata_contig94024:2472..2529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 2473..2529 -
1691679795.1601665-UTR-H-elongata_contig94024:2472..25291691679795.1601665-UTR-H-elongata_contig94024:2472..2529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94024 2473..2529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.6034632-CDS-H-elongata_contig94024:989..10371622931336.6034632-CDS-H-elongata_contig94024:989..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 990..1037 -
1691679795.1023278-CDS-H-elongata_contig94024:989..10371691679795.1023278-CDS-H-elongata_contig94024:989..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 990..1037 -
1622931336.6220276-CDS-H-elongata_contig94024:1300..14451622931336.6220276-CDS-H-elongata_contig94024:1300..1445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 1301..1445 -
1691679795.116349-CDS-H-elongata_contig94024:1300..14451691679795.116349-CDS-H-elongata_contig94024:1300..1445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 1301..1445 -
1622931336.6343045-CDS-H-elongata_contig94024:1660..18641622931336.6343045-CDS-H-elongata_contig94024:1660..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 1661..1864 -
1691679795.1305954-CDS-H-elongata_contig94024:1660..18641691679795.1305954-CDS-H-elongata_contig94024:1660..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 1661..1864 -
1622931336.6454415-CDS-H-elongata_contig94024:2084..22751622931336.6454415-CDS-H-elongata_contig94024:2084..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 2085..2275 -
1691679795.140221-CDS-H-elongata_contig94024:2084..22751691679795.140221-CDS-H-elongata_contig94024:2084..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94024 2085..2275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94024.16835.1prot_H-elongata_contig94024.16835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94024 990..2275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94024.16835.1

>prot_H-elongata_contig94024.16835.1 ID=prot_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQ
AVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGW
DPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQ
QFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP*
back to top

mRNA from alignment at H-elongata_contig94024:431..2529-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94024.16835.1 ID=mRNA_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2099bp|location=Sequence derived from alignment at H-elongata_contig94024:431..2529- (Himanthalia elongata Himel1 dioecious)
CCCCTCGTCCTGGGCTGCGATGGTCCACTGGTCGGCGTTGATACCGAAAA CTTTGAGGTACGTTTAAATCTCGTTACATTGCCTGTTATTTCATATATTT ATATATTTTATTCGATGGTCTGCGTCTCCGGTTCTCTAGGACGGATGCTC TTGTGAACTCACCATTAACTTCATAAGCTAAGTCATCGAAGCCCTAAACG AGGATTTACTCGACGTACTCGTCATTTCTGACCTGATATTTCCAGACCAC AATCATGGCCGTAACATATGACGGTGGGGTCATCATGGGCGCAGACTCTC GGACATCGACTGGAACATACGTGGCCAACCGCGTGAGCGACAAAATCACG TCACTGCATGATTACATCTACGCCTGTCGGTCGGGTTCTGCGGCTGATAC CCAGGCCGTCTCGGACTACGTTCGTTACTTCCTTGCCTCGCATAGGTGCG TGTCAAATTTCCTCTAATAGTAAAGACAGCTTTTGAAACGTCTAAACTGG ACGAACATCGTTTCCTTTCCTTCAATATTTGCCATTTGCCGGACTTGAGC ACTTAACATATTGCCCATCCGCGATCGAAATTTGTAAACCTCCTTCTCGA TCTCTTGTCGCGTGCGTTTCCCTCCTCCTGATTTATTCAACCACACGTAC CTGCTCCCGCCTTAGTGCTGAATTAGGACGACTGCCAGCCGTCAAAACCG CAGCGTCACTCGTGCGGGGGTTATGCTACAAAAACAAGGATCGGCTTCTG GCAGGGATGATCATAGCAGGCTGGGACCCGGTGGATGGGGGATCTGTTTA TGAAATTCCTTTGGGGGGGACAGTGATAAAACAGAAATTCGCCATCGGGG GTTCTGGCTCTACCTACATGTGAGCAGTTGTGAACGTCTCAACAAAGAGA ATGAATGGGCGTTGATAACAATGCTCACTGTAAAGACCCATTTCGCAACT CAATTTAATGTTTGAACTTTTAACCCTGATATCATATTTTTGTCTAAAAT GATCCTTCATTTCCCCCCATCACATGGCTAGATACTTCTAATGTCCTCAG TTTTTCATTTTGTATTTTTTGCTTTCCCTACCAGCTACGGCCACGTGGAT TCCGCTTTCAAAGAAAACATGACCAAGGAAGAAGCACAGCAATTCGTGCG TAAGGCTATTTCTCACGCGATGGCCCGCGATGGAAGCTCTGGAGGAGTCA TCCGAATGGTGGTGATCGACAAGACGGGGGTGAGCTCGAATCTGAAGGAC AAAGCTGACCTTGGAAAAGTCTTCCCTTTTTGGCTTATGTTAATTGCGAA GAGTGATGAGAAAATATATGTGCTGTTAAACGTAACCCTTGATATTTGCG CCGTTTTTGGTCCCTCGTTCGACTCATATGATTTAACCAAACGCAACCTT CATTCTTTTCTCCCTAAAACCTGTCGTATTATGTCGTATTATGTCGTATA ATGTCGTATAAATGATGTCCTTGTTCGGCTCTGGCTACCCAGGTGTCTCG TGAGTACATTCCGGGGGACAAGCTGCCATTCGGGCCGTGATCATCACTTC GGGTCGAATTTAGCGGCAACAGTTGTGCGTTCATAGGATGTTATCGATCG CATGGTTTTTGGACTAAACTACTTGTTCCATACCAACTATAATAGCGGAA CTTATCATGTTTGTGAATCGTTTGGAGAGTAGTGGCGGTGTTTCTTTTCG CTATGCTGCTCCCTCCAATGAATATTGCAGATATAATCTTGATGAACCAA ATGTGGCTAATGTATGCCCTAATTAGGGTATGTTTTAATGTACTCCCGAG AGGTGAGATGGGCATCTCACTCATTAACAGCCTCTCTATAATTATTTTTT TACCCTAGTTCGCAAACAATTACTCGTACCGCAGACCTACGTCATTTCCC TACACTGTACGACCCCACTTGCCCCCCCCCCCGTAAAGAAATGCTTCTAT TGTTCCATATGACCCGCTTAACCCCTTCCTTTTTCTTCTCTTTAATCACT ACCGTACTAAATTATTCTTCGATATTAAGGGTATGTAGCGTATAAAGATT TAAACTTTTTGTACTATCTCCTTATAATATCTTATGAAAGCTTTCGATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig94024:431..2529-

>mRNA_H-elongata_contig94024.16835.1 ID=mRNA_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig94024:431..2529- (Himanthalia elongata Himel1 dioecious)
ATGGCCGTAACATATGACGGTGGGGTCATCATGGGCGCAGACTCTCGGAC
ATCGACTGGAACATACGTGGCCAACCGCGTGAGCGACAAAATCACGTCAC
TGCATGATTACATCTACGCCTGTCGGTCGGGTTCTGCGGCTGATACCCAG
GCCGTCTCGGACTACGTTCGTTACTTCCTTGCCTCGCATAGATGGCCGTA
ACATATGACGGTGGGGTCATCATGGGCGCAGACTCTCGGACATCGACTGG
AACATACGTGGCCAACCGCGTGAGCGACAAAATCACGTCACTGCATGATT
ACATCTACGCCTGTCGGTCGGGTTCTGCGGCTGATACCCAGGCCGTCTCG
GACTACGTTCGTTACTTCCTTGCCTCGCATAGTGCTGAATTAGGACGACT
GCCAGCCGTCAAAACCGCAGCGTCACTCGTGCGGGGGTTATGCTACAAAA
ACAAGGATCGGCTTCTGGCAGGGATGATCATAGCAGGCTGGGACCCGGTG
GATGGGGGATCTGTTTATGAAATTCCTTTGGGGGGGACAGTGATAAAACA
GAAATTCGCCATCGGGGGTTCTGGCTCTACCTACATTGCTGAATTAGGAC
GACTGCCAGCCGTCAAAACCGCAGCGTCACTCGTGCGGGGGTTATGCTAC
AAAAACAAGGATCGGCTTCTGGCAGGGATGATCATAGCAGGCTGGGACCC
GGTGGATGGGGGATCTGTTTATGAAATTCCTTTGGGGGGGACAGTGATAA
AACAGAAATTCGCCATCGGGGGTTCTGGCTCTACCTACATCTACGGCCAC
GTGGATTCCGCTTTCAAAGAAAACATGACCAAGGAAGAAGCACAGCAATT
CGTGCGTAAGGCTATTTCTCACGCGATGGCCCGCGATGGAAGCTCTGGAG
GAGTCATCCGAATGGTGGTGATCGACAAGACGGGGCTACGGCCACGTGGA
TTCCGCTTTCAAAGAAAACATGACCAAGGAAGAAGCACAGCAATTCGTGC
GTAAGGCTATTTCTCACGCGATGGCCCGCGATGGAAGCTCTGGAGGAGTC
ATCCGAATGGTGGTGATCGACAAGACGGGGGTGTCTCGTGAGTACATTCC
GGGGGACAAGCTGCCATTCGGGCCGTGAGTGTCTCGTGAGTACATTCCGG
GGGACAAGCTGCCATTCGGGCCGTGA
back to top