mRNA_H-elongata_contig94006.16833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94006.16833.1
Unique NamemRNA_H-elongata_contig94006.16833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94006.16833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94006contigH-elongata_contig94006:740..1525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size767
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.3665948-CDS-H-elongata_contig94006:739..12231622931336.3665948-CDS-H-elongata_contig94006:739..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94006 740..1223 +
1691679795.000875-CDS-H-elongata_contig94006:739..12231691679795.000875-CDS-H-elongata_contig94006:739..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94006 740..1223 +
1622931336.3817356-CDS-H-elongata_contig94006:1244..15251622931336.3817356-CDS-H-elongata_contig94006:1244..1525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94006 1245..1525 +
1691679795.0106163-CDS-H-elongata_contig94006:1244..15251691679795.0106163-CDS-H-elongata_contig94006:1244..1525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94006 1245..1525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94006.16833.1prot_H-elongata_contig94006.16833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94006 740..1525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94006.16833.1

>prot_H-elongata_contig94006.16833.1 ID=prot_H-elongata_contig94006.16833.1|Name=mRNA_H-elongata_contig94006.16833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
VYDGGWPAFVELVHPTVMEVAAGGAARGDKAKSVADAAAEAPTPVSVTLA
PSQHPRASLLRGGKGNISSFGGGRGGVSSGFKGDGEWEGGEGGGFDEGTA
TARAVASAEASERSGDNEHVSTEGEMRGEEEAAGAGAGPVGGVRSTWRPP
FYNADTEGGMRKGHVGRRLLEQAVSLEPVGGVEDRARRRRLWDWSNAKKE
EAQPSAPFFIQEESGAPGEEEEKRREEAGSSRRARVVPSTPSTRSVTSMV
EVTTG
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mRNA from alignment at H-elongata_contig94006:740..1525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94006.16833.1 ID=mRNA_H-elongata_contig94006.16833.1|Name=mRNA_H-elongata_contig94006.16833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig94006:740..1525+ (Himanthalia elongata Himel1 dioecious)
GTCTACGATGGAGGATGGCCGGCGTTCGTTGAATTGGTACATCCTACTGT
GATGGAAGTGGCTGCCGGCGGTGCTGCTCGTGGGGATAAGGCTAAGTCTG
TTGCTGATGCAGCTGCCGAGGCACCCACGCCGGTGTCGGTAACATTAGCG
CCGTCGCAACATCCGCGCGCCAGCCTTCTCCGAGGTGGCAAAGGAAATAT
ATCCTCCTTTGGTGGCGGCCGAGGTGGGGTTTCAAGCGGCTTCAAAGGCG
ACGGTGAATGGGAGGGAGGGGAAGGGGGAGGGTTTGACGAGGGGACGGCC
ACAGCTCGTGCCGTGGCGTCGGCGGAAGCGTCGGAGCGAAGCGGGGATAA
CGAACACGTGTCCACCGAGGGGGAAATGAGAGGAGAGGAAGAAGCAGCAG
GAGCGGGAGCGGGACCTGTTGGTGGTGTCCGATCGACTTGGCGGCCGCCG
TTCTACAACGCGGACACGGAAGGTGGCATGAGGAGCAGGACCTTGGTGCC
TGGAGAAGGCCACGTCGGCCGTCGTTTGCTAGAGCAAGCGGTGTCCTTGG
AGCCCGTCGGAGGGGTCGAGGACCGTGCAAGGCGTCGTCGGCTGTGGGAC
TGGTCAAATGCAAAGAAGGAAGAAGCGCAGCCAAGCGCACCTTTTTTCAT
CCAGGAGGAGTCGGGAGCGCCAGGGGAAGAGGAAGAGAAACGAAGGGAGG
AGGCCGGGAGTTCGAGACGCGCGCGGGTAGTTCCTTCAACTCCGTCGACC
AGGTCAGTGACGTCAATGGTAGAAGTAACAACGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig94006:740..1525+

>mRNA_H-elongata_contig94006.16833.1 ID=mRNA_H-elongata_contig94006.16833.1|Name=mRNA_H-elongata_contig94006.16833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig94006:740..1525+ (Himanthalia elongata Himel1 dioecious)
GTCTACGATGGAGGATGGCCGGCGTTCGTTGAATTGGTACATCCTACTGT
GATGGAAGTGGCTGCCGGCGGTGCTGCTCGTGGGGATAAGGCTAAGTCTG
TTGCTGATGCAGCTGCCGAGGCACCCACGCCGGTGTCGGTAACATTAGCG
CCGTCGCAACATCCGCGCGCCAGCCTTCTCCGAGGTGGCAAAGGAAATAT
ATCCTCCTTTGGTGGCGGCCGAGGTGGGGTTTCAAGCGGCTTCAAAGGCG
ACGGTGAATGGGAGGGAGGGGAAGGGGGAGGGTTTGACGAGGGGACGGCC
ACAGCTCGTGCCGTGGCGTCGGCGGAAGCGTCGGAGCGAAGCGGGGATAA
CGAACACGTGTCCACCGAGGGGGAAATGAGAGGAGAGGAAGAAGCAGCAG
GAGCGGGAGCGGGACCTGTTGGTGGTGTCCGATCGACTTGGCGGCCGCCG
TTCTACAACGCGGACACGGAAGGTGGCATGAGGAGTCTACGATGGAGGAT
GGCCGGCGTTCGTTGAATTGGTACATCCTACTGTGATGGAAGTGGCTGCC
GGCGGTGCTGCTCGTGGGGATAAGGCTAAGTCTGTTGCTGATGCAGCTGC
CGAGGCACCCACGCCGGTGTCGGTAACATTAGCGCCGTCGCAACATCCGC
GCGCCAGCCTTCTCCGAGGTGGCAAAGGAAATATATCCTCCTTTGGTGGC
GGCCGAGGTGGGGTTTCAAGCGGCTTCAAAGGCGACGGTGAATGGGAGGG
AGGGGAAGGGGGAGGGTTTGACGAGGGGACGGCCACAGCTCGTGCCGTGG
CGTCGGCGGAAGCGTCGGAGCGAAGCGGGGATAACGAACACGTGTCCACC
GAGGGGGAAATGAGAGGAGAGGAAGAAGCAGCAGGAGCGGGAGCGGGACC
TGTTGGTGGTGTCCGATCGACTTGGCGGCCGCCGTTCTACAACGCGGACA
CGGAAGGTGGCATGAGGAAAGGCCACGTCGGCCGTCGTTTGCTAGAGCAA
GCGGTGTCCTTGGAGCCCGTCGGAGGGGTCGAGGACCGTGCAAGGCGTCG
TCGGCTGTGGGACTGGTCAAATGCAAAGAAGGAAGAAGCGCAGCCAAGCG
CACCTTTTTTCATCCAGGAGGAGTCGGGAGCGCCAGGGGAAGAGGAAGAG
AAACGAAGGGAGGAGGCCGGGAGTTCGAGACGCGCGCGGGTAGTTCCTTC
AACTCCGTCGACCAGGTCAGTGACGTCAATGGTAGAAGTAACAACGGGGA
AGGCCACGTCGGCCGTCGTTTGCTAGAGCAAGCGGTGTCCTTGGAGCCCG
TCGGAGGGGTCGAGGACCGTGCAAGGCGTCGTCGGCTGTGGGACTGGTCA
AATGCAAAGAAGGAAGAAGCGCAGCCAAGCGCACCTTTTTTCATCCAGGA
GGAGTCGGGAGCGCCAGGGGAAGAGGAAGAGAAACGAAGGGAGGAGGCCG
GGAGTTCGAGACGCGCGCGGGTAGTTCCTTCAACTCCGTCGACCAGGTCA
GTGACGTCAATGGTAGAAGTAACAACGGGG
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