mRNA_H-elongata_contig12203.1683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12203.1683.1
Unique NamemRNA_H-elongata_contig12203.1683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12203.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12203contigH-elongata_contig12203:282..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12203.1683.1prot_H-elongata_contig12203.1683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12203 320..622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.2635188-UTR-H-elongata_contig12203:281..3191622929718.2635188-UTR-H-elongata_contig12203:281..319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12203 282..319 +
1691679130.9910686-UTR-H-elongata_contig12203:281..3191691679130.9910686-UTR-H-elongata_contig12203:281..319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12203 282..319 +
1622929718.2848132-UTR-H-elongata_contig12203:622..8251622929718.2848132-UTR-H-elongata_contig12203:622..825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12203 623..825 +
1691679131.0087595-UTR-H-elongata_contig12203:622..8251691679131.0087595-UTR-H-elongata_contig12203:622..825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12203 623..825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.2744713-CDS-H-elongata_contig12203:319..6221622929718.2744713-CDS-H-elongata_contig12203:319..622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12203 320..622 +
1691679130.999718-CDS-H-elongata_contig12203:319..6221691679130.999718-CDS-H-elongata_contig12203:319..622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12203 320..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12203.1683.1

>prot_H-elongata_contig12203.1683.1 ID=prot_H-elongata_contig12203.1683.1|Name=mRNA_H-elongata_contig12203.1683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MFGSSFGEFAFKIVWNHRTHCSRMSSATLRCMPSSFLWTSSCRLDSLLSS
SSSCVTRSRYDSLLECVFRFCGQMSKRSSARHPRKPSEDFCQPSSRAFDG
*
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mRNA from alignment at H-elongata_contig12203:282..825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12203.1683.1 ID=mRNA_H-elongata_contig12203.1683.1|Name=mRNA_H-elongata_contig12203.1683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=544bp|location=Sequence derived from alignment at H-elongata_contig12203:282..825+ (Himanthalia elongata Himel1 dioecious)
GCGGCGTGTTCTCTGGCCGCTAGTCGAGGCTATCGGTGATGTTCGGGTCG
AGCTTCGGCGAATTTGCGTTCAAGATAGTTTGGAACCACCGGACTCATTG
CTCACGGATGAGTTCAGCCACCCTCAGGTGTATGCCGTCCTCGTTTTTAT
GGACGTCGAGCTGTCGGCTCGATTCCCTTCTAAGTTCATCGTCTTCATGT
GTTACAAGAAGCCGGTATGATAGTCTTCTCGAATGCGTGTTTCGATTTTG
CGGACAAATGTCCAAAAGAAGCTCAGCACGGCATCCTCGCAAACCTTCCG
AAGATTTTTGCCAACCATCTTCACGGGCTTTCGACGGTTGAAATTATGGG
GTTCTGCAGATAGGCGCCTCCTCGCCTCCTCTCTCTGTTGCCATGCTGCA
TTCATTTCAGCCTCCACGCCAGGACCCGCGCACCAACCCTGTGCTGCGCG
CGGGCGCTTAGAGCGCGGTGTCAGTTCGGCCGCAGTGGAAAGTATGACGT
CAGCCATGTCGGTGGCGATGTCACTGATGTAGGTGTCATCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig12203:282..825+

>mRNA_H-elongata_contig12203.1683.1 ID=mRNA_H-elongata_contig12203.1683.1|Name=mRNA_H-elongata_contig12203.1683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig12203:282..825+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGGTCGAGCTTCGGCGAATTTGCGTTCAAGATAGTTTGGAACCA
CCGGACTCATTGCTCACGGATGAGTTCAGCCACCCTCAGGTGTATGCCGT
CCTCGTTTTTATGGACGTCGAGCTGTCGGCTCGATTCCCTTCTAAGTTCA
TCGTCTTCATGTGTTACAAGAAGCCGGTATGATAGTCTTCTCGAATGCGT
GTTTCGATTTTGCGGACAAATGTCCAAAAGAAGCTCAGCACGGCATCCTC
GCAAACCTTCCGAAGATTTTTGCCAACCATCTTCACGGGCTTTCGACGGT
TGAATGTTCGGGTCGAGCTTCGGCGAATTTGCGTTCAAGATAGTTTGGAA
CCACCGGACTCATTGCTCACGGATGAGTTCAGCCACCCTCAGGTGTATGC
CGTCCTCGTTTTTATGGACGTCGAGCTGTCGGCTCGATTCCCTTCTAAGT
TCATCGTCTTCATGTGTTACAAGAAGCCGGTATGATAGTCTTCTCGAATG
CGTGTTTCGATTTTGCGGACAAATGTCCAAAAGAAGCTCAGCACGGCATC
CTCGCAAACCTTCCGAAGATTTTTGCCAACCATCTTCACGGGCTTTCGAC
GGTTGA
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