mRNA_H-elongata_contig93929.16829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93929.16829.1
Unique NamemRNA_H-elongata_contig93929.16829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93929.16829.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 YYWSFFTLIIDLIIARFVFRFARILNSLTPAEIEQLRNPSAVWSANYRRQ-----PFQML 165
            Y+W  F   + L IAR ++RFA++L++L+PAEIEQLRNP+AVWS  YRRQ     PFQ L
Sbjct:  176 YFWFIFLFALSLYIARVIWRFAKVLDTLSPAEIEQLRNPTAVWSGQYRRQHQNQQPFQSL 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93929.16829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAV0_9PHAE3.800e-1256.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93929contigH-elongata_contig93929:2017..2435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.97755-CDS-H-elongata_contig93929:2016..21151622931335.97755-CDS-H-elongata_contig93929:2016..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93929 2017..2115 -
1691679794.858052-CDS-H-elongata_contig93929:2016..21151691679794.858052-CDS-H-elongata_contig93929:2016..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93929 2017..2115 -
1622931335.9937012-CDS-H-elongata_contig93929:2366..24351622931335.9937012-CDS-H-elongata_contig93929:2366..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93929 2367..2435 -
1691679794.8742096-CDS-H-elongata_contig93929:2366..24351691679794.8742096-CDS-H-elongata_contig93929:2366..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93929 2367..2435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93929.16829.1prot_H-elongata_contig93929.16829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93929 2017..2435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93929.16829.1

>prot_H-elongata_contig93929.16829.1 ID=prot_H-elongata_contig93929.16829.1|Name=mRNA_H-elongata_contig93929.16829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
YYWSFFTLIIDLIIARFVFRFARILNSLTPAEIEQLRNPSAVWSANYRRQ
PFQML*
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mRNA from alignment at H-elongata_contig93929:2017..2435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93929.16829.1 ID=mRNA_H-elongata_contig93929.16829.1|Name=mRNA_H-elongata_contig93929.16829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=419bp|location=Sequence derived from alignment at H-elongata_contig93929:2017..2435- (Himanthalia elongata Himel1 dioecious)
TACTACTGGTCTTTCTTTACCCTCATCATCGACCTCATCATCGCGCGCTT
CGTCTTCCGCTTTGCAAGGGTAAGTTCTCTCTGTCGGCTGCTGCTTTTGC
CTCGCTGCTTATGTTTACCACTGTGGCTTCCGGGGGATGCCGCGGAGCTC
TCCAACCTTTTGGCTTCTTCAACCGCCACCAATTCATGAATCGTACCTCT
ACCTCAAGGCCGATGAAATACCGCCGTGTCATCAATCTCACGAGGCGCAA
CAAGTTGCTTAAATGAATGCGCCCCGCCCCCCTCCCCACTTTCTCCTCCC
CCCCTCTATCACGCCCTCAGATTTTGAACTCCCTCACCCCGGCCGAGATT
GAGCAACTCCGAAACCCTTCCGCGGTGTGGTCCGCGAACTACCGACGACA
GCCCTTCCAGATGTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig93929:2017..2435-

>mRNA_H-elongata_contig93929.16829.1 ID=mRNA_H-elongata_contig93929.16829.1|Name=mRNA_H-elongata_contig93929.16829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig93929:2017..2435- (Himanthalia elongata Himel1 dioecious)
TACTACTGGTCTTTCTTTACCCTCATCATCGACCTCATCATCGCGCGCTT
CGTCTTCCGCTTTGCAAGGTACTACTGGTCTTTCTTTACCCTCATCATCG
ACCTCATCATCGCGCGCTTCGTCTTCCGCTTTGCAAGGATTTTGAACTCC
CTCACCCCGGCCGAGATTGAGCAACTCCGAAACCCTTCCGCGGTGTGGTC
CGCGAACTACCGACGACAGCCCTTCCAGATGTTGTGAATTTTGAACTCCC
TCACCCCGGCCGAGATTGAGCAACTCCGAAACCCTTCCGCGGTGTGGTCC
GCGAACTACCGACGACAGCCCTTCCAGATGTTGTGA
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