prot_H-elongata_contig93913.16828.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig93913.16828.1
Unique Nameprot_H-elongata_contig93913.16828.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length376
Homology
BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.240e-81
Identity = 196/375 (52.27%), Postives = 235/375 (62.67%), Query Frame = 0
Query:    1 LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRRTVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAATRRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAATADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEAFVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRARARARLSAATMGIVAQAFQRWRV--RAAHDRAKERAIAALEGVCGRRRSDQAGKLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGVAVEATGAFSLASSVRTVADTKED 373
            LRAW +  RR R   A   RA R + SLEK++   +F AWR AA   +RR   ISGACARLR+VR R GRLQL S+FS+WARLS A +H++  ++ AA  +RQ+ +RTC + L  NA++R+R RRA+ SLDR   L +LARGWGAM  AA     E R+  RL   EA VA GR   R RAHRTARRLLGVARGRAALEAFVAWR  VR+GRGARLGA ALAAR            WR ++  SSRLR+RA +R+S A  G+V++AF  WR   R AH +AK  A+ AL     RRRSD+A   LALRTW RNAC    D  G    +     G  E G      LE +AGV VEA  AFS ASS+  V    ED
Sbjct:  427 LRAWSEGARRRRRFAATFWRAARAVRSLEKRQQHVAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASSFSIWARLSAASSHSDRHAEIAACAKRQRAVRTCFSTLRSNASLRQRTRRALSSLDRRCSLSQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALAAR------------WRGEARASSRLRSRALSRISQAAQGLVSEAFSTWREGSRIAHGKAK--ALTALARASDRRRSDRAEMRLALRTWTRNACGGDGDGGGRRSGDGEPRGGGMEDG------LEAVAGVFVEAAAAFSTASSIPEVFTLVED 781          
BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.280e-64
Identity = 172/373 (46.11%), Postives = 204/373 (54.69%), Query Frame = 0
Query:    1 LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRRTVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAATRRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAATADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEAFVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRARARARLSAATMGIVAQAFQRWRVRAAHDRAKERAIAALEGVCGRRRSDQAGKLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGVAVEATGAFSLASSVRTVADTKED 373
            LRAW +  RR R   A   RA R + SLEK++   +F AWR AA   +RR   ISGACARLR+VR R GRLQL SAFS+WARLS A +H++  ++ AA T+RQ+ +RTC + L  NA++RRR RRA+ SLDR   L +LARGWGAM  AA     E R+  RL   EA VA GR   R RAHRTARRLLGVARGRAALEAFVAWR  VR+GRGARLGA AL                                                 R  +     K +A+ AL     RR+SD+A   LALRTWRRNAC    D  G               G   ++ LE +AG  VEA  AFS ASS+  V    ED
Sbjct:   58 LRAWSEGARRRRRFAATFWRAARAVRSLEKRQQHGAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASAFSIWARLSAASSHSDRHAEIAACTKRQRAVRTCFSTLRSNASLRRRARRALFSLDRRCSLRQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRTRAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGSRQAHGKAKALTALARASDRRQSDRAEMRLALRTWRRNACGGDGDGGGGRXXXXEP------RGGGMADGLEAMAGAFVEAAAAFSTASSIPEVFTLVED 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE1.240e-8152.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI1.280e-6446.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93913contigH-elongata_contig93913:63..2035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93913.16828.1mRNA_H-elongata_contig93913.16828.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig93913 63..2035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig93913.16828.1 ID=prot_H-elongata_contig93913.16828.1|Name=mRNA_H-elongata_contig93913.16828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRR
TVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAAT
RRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAA
TADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEA
FVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRAR
ARARLSAATMGIVAQAFQRWRVRAAHDRAKERAIAALEGVCGRRRSDQAG
KLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGV
AVEATGAFSLASSVRTVADTKEDVP*
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