mRNA_H-elongata_contig93898.16827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93898.16827.1
Unique NamemRNA_H-elongata_contig93898.16827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93898.16827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93898contigH-elongata_contig93898:1340..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93898.16827.1prot_H-elongata_contig93898.16827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93898 1467..1745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.7950964-UTR-H-elongata_contig93898:1339..14661622931335.7950964-UTR-H-elongata_contig93898:1339..1466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93898 1340..1466 +
1691679794.8034854-UTR-H-elongata_contig93898:1339..14661691679794.8034854-UTR-H-elongata_contig93898:1339..1466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93898 1340..1466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.823901-CDS-H-elongata_contig93898:1466..16471622931335.823901-CDS-H-elongata_contig93898:1466..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93898 1467..1647 +
1691679794.8124712-CDS-H-elongata_contig93898:1466..16471691679794.8124712-CDS-H-elongata_contig93898:1466..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93898 1467..1647 +
1622931335.8402243-CDS-H-elongata_contig93898:1665..17451622931335.8402243-CDS-H-elongata_contig93898:1665..1745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93898 1666..1745 +
1691679794.8221047-CDS-H-elongata_contig93898:1665..17451691679794.8221047-CDS-H-elongata_contig93898:1665..1745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93898 1666..1745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93898.16827.1

>prot_H-elongata_contig93898.16827.1 ID=prot_H-elongata_contig93898.16827.1|Name=mRNA_H-elongata_contig93898.16827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MDAEMTFVHFSGNKIGPSNFIRGTDIQHGFEKVRRFGKLVVADGLDIGGD
DASITRIVENGLITCIADAGNKTLHGIDPSTVKSYIG
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mRNA from alignment at H-elongata_contig93898:1340..1745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93898.16827.1 ID=mRNA_H-elongata_contig93898.16827.1|Name=mRNA_H-elongata_contig93898.16827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=406bp|location=Sequence derived from alignment at H-elongata_contig93898:1340..1745+ (Himanthalia elongata Himel1 dioecious)
ATTAGAGTCAAGACTACAGCCCTCTTCCGTTGTGATACACAGCAAGCTTA
CCCTGAGCCAGTATAATCGTAGTTCACTTGCCTAGACCTCAATTTAATCG
GGAGCGATTGGATACCCAGCAGCGGCAATGGATGCTGAGATGACCTTCGT
GCATTTTTCTGGCAACAAGATAGGGCCGTCTAACTTTATACGGGGTACTG
ATATTCAACATGGCTTCGAAAAGGTTCGTCGCTTCGGCAAGCTGGTTGTG
GCTGATGGACTCGACATCGGGGGTGATGATGCCAGTATCACAAGAATTGT
CGAGAATGGTGATTGTGGTTTCGCAGGACTTATCACATGCATCGCAGACG
CTGGTAACAAGACCTTGCATGGCATCGACCCTTCTACCGTGAAGTCTTAC
ATTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig93898:1340..1745+

>mRNA_H-elongata_contig93898.16827.1 ID=mRNA_H-elongata_contig93898.16827.1|Name=mRNA_H-elongata_contig93898.16827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig93898:1340..1745+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCTGAGATGACCTTCGTGCATTTTTCTGGCAACAAGATAGGGCC
GTCTAACTTTATACGGGGTACTGATATTCAACATGGCTTCGAAAAGGTTC
GTCGCTTCGGCAAGCTGGTTGTGGCTGATGGACTCGACATCGGGGGTGAT
GATGCCAGTATCACAAGAATTGTCGAGAATGATGGATGCTGAGATGACCT
TCGTGCATTTTTCTGGCAACAAGATAGGGCCGTCTAACTTTATACGGGGT
ACTGATATTCAACATGGCTTCGAAAAGGTTCGTCGCTTCGGCAAGCTGGT
TGTGGCTGATGGACTCGACATCGGGGGTGATGATGCCAGTATCACAAGAA
TTGTCGAGAATGGACTTATCACATGCATCGCAGACGCTGGTAACAAGACC
TTGCATGGCATCGACCCTTCTACCGTGAAGTCTTACATTGGGGACTTATC
ACATGCATCGCAGACGCTGGTAACAAGACCTTGCATGGCATCGACCCTTC
TACCGTGAAGTCTTACATTGGG
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