mRNA_H-elongata_contig9387.16826.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.830e-49 Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDPTTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
R++DAMN+ALSASDL LVMWLCGRLDP TPS LPQHIL+CL+QQ ASDLL+DTTAKL+WLQ+C LA+DP E I AHLP+VL QLK AL +TP I+ RGG D+ VVRLTTHV+NSL
Sbjct: 1680 RVDDAMNRALSASDLPLVMWLCGRLDPVATPSTLPQHILLCLVQQFGASDLLEDTTAKLKWLQNCVLAIDPTEATIRAHLPVVLRQLKGALTTSTPIISQRGGTDVSVVRLTTHVVNSL 1798
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A5J9UX26_9POAL (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UX26_9POAL) HSP 1 Score: 75.9 bits (185), Expect = 1.320e-13 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDPTTTPSALP----QHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALL--AATPTIALRGGPDIIVVRLTTHVINSL 357
+ ++A AL SD+ +V WLC ++D + P Q +L+ LLQQL A D+ +DT+ KLQW+ A+A++P +P I AH+ + EQ+ L A PT + G I RL H+INS+
Sbjct: 1260 KFDEAFTMALHRSDVSIVSWLCSQVDLRALCAMAPLPFNQGVLLALLQQL-AIDINNDTSRKLQWMTDVAMAINPADPVIAAHVRPIFEQVYGQLAHHRALPTTSAADGTSI---RLLMHIINSV 1380
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: C1EEP4_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EEP4_MICCC) HSP 1 Score: 72.4 bits (176), Expect = 6.180e-13 Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 7 EDAMNQALSASDLHLVMWLCGRLDPT------TTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVL----EQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
E+A +AL + + V W CGR +P P L Q +L+ L+QQLS SDL D+ + KLQW+Q+ LA+DP + + LP++L + L A +RG +RL HV+NSL
Sbjct: 127 EEAFQKALGMASVETVTWTCGRCEPVRDDIFGAVPVPLSQTVLLSLMQQLS-SDLDDEPSLKLQWIQAACLAMDPSDQSLAQALPVILGAVFDSLTETAQAPDTPAGVRGD-----LRLVLHVVNSL 247
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: UPI001F5CDF23 (enhancer of mRNA-decapping protein 4-like isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDF23) HSP 1 Score: 72.4 bits (176), Expect = 2.160e-12 Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
+ ++A AL SD+ +V WLC ++D T P L Q +L+ LLQQL A D+ +++ K+QW+ A+A++P + I AH+ + EQ+ A LA T+ DI +RL HVINS+
Sbjct: 1201 KFDEAFTVALQRSDVSIVSWLCSQVDLRGLCTMAPLPLNQGVLLALLQQL-AVDIYTESSRKIQWMTDVAMAINPTDQVIAAHVRPIFEQVY-AKLAHHRTLPSTNPADISNLRLLMHVINSV 1321
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A6L2PLN2_COPFO (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PLN2_COPFO) HSP 1 Score: 67.4 bits (163), Expect = 1.220e-10 Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSAL 273
++ A QALSASDL LV+++C +++P TP L QH+L+ L+QQLSA D+ + T K ++L+ + +DP P H+P VL L+ L
Sbjct: 1069 QINAAFQQALSASDLSLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNYTELKHKYLEEAVMNLDPTNPLTREHMPGVLNNLQHQL 1162
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A7J7LFG8_9MAGN (Ge1_WD40 domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LFG8_9MAGN) HSP 1 Score: 67.4 bits (163), Expect = 1.230e-10 Identity = 40/123 (32.52%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
+ E+A AL SD+ +V WLC ++D + +P ++ Q +L+ L+QQL A D ++T+ K+ W++ ALA++P +P I AH+ + EQ+ +L+ ++ + +RL H+I+SL
Sbjct: 1238 KYEEAFMAALQRSDVSIVSWLCSQVDLNGILSQSPLSMTQGVLLALIQQL-ACDFSNETSRKVTWMKDVALAINPGDPVIAAHVRPIFEQVYQ-ILSHHHSLPSSNTTETSSIRLLMHLIHSL 1358
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A1B6EJ47_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EJ47_9HEMI) HSP 1 Score: 65.5 bits (158), Expect = 1.400e-10 Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
++ A QALSASDL+LV+++C +++P + +P L QH+L+ L+QQLSA D+ + T K ++L+ + +D + HLP+VL L+ L A
Sbjct: 82 QINTAFQQALSASDLNLVVFVCEKVNPQQLFSQSPCPLQQHVLLSLVQQLSA-DMNNHTDIKHKYLEEALMNLDTKNAMTREHLPVVLNNLQRQLQA 177
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A2J7QWG6_9NEOP (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QWG6_9NEOP) HSP 1 Score: 67.0 bits (162), Expect = 1.640e-10 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
++ A QALSASDL LV+++C +++P TP L QH+L+ L+QQLSA D+ + T K ++L+ + +D P H+P VL L+ L A
Sbjct: 794 QINTAFQQALSASDLGLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNHTELKHKYLEEAVMNLDATNPLTREHMPAVLTNLQRQLTA 889
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A2J7QWF5_9NEOP (Ge1_WD40 domain-containing protein n=4 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QWF5_9NEOP) HSP 1 Score: 67.0 bits (162), Expect = 1.670e-10 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
++ A QALSASDL LV+++C +++P TP L QH+L+ L+QQLSA D+ + T K ++L+ + +D P H+P VL L+ L A
Sbjct: 1085 QINTAFQQALSASDLGLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNHTELKHKYLEEAVMNLDATNPLTREHMPAVLTNLQRQLTA 1180
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A8J1TTT9_OWEFU (Ofus.G063471 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TTT9_OWEFU) HSP 1 Score: 67.0 bits (162), Expect = 1.680e-10 Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 1 RLEDAMNQALSASDLHLVMWLCGRLDPTT----TPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPT 291
+L A QALSASDL+LV+++C ++PT TP L Q +L+ L+QQLSA DL +T K Q+L+ + +D P H+P+VL L + A T
Sbjct: 1311 QLNTAFQQALSASDLNLVIFVCETVNPTQVFHQTPCPLEQPVLLSLIQQLSA-DLETNTELKHQYLEEAVMNLDSTNPVTREHMPIVLHTLCQKIHACLQT 1410 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9387.16826.1 >prot_H-elongata_contig9387.16826.1 ID=prot_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp MNQALSASDLHLVMWLCGRLDPTTTPSALPQHILVCLLQQLSASDLLDDTback to top mRNA from alignment at H-elongata_contig9387:7491..8564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9387.16826.1 ID=mRNA_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig9387:7491..8564- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9387:7491..8564- >mRNA_H-elongata_contig9387.16826.1 ID=mRNA_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig9387:7491..8564- (Himanthalia elongata Himel1 dioecious)back to top |